CB293424

Overview
NameCB293424
Unique NameCB293424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293424 vs. ExPASy Swiss-Prot
Match: YGD4_SCHPO (Putative uncharacterized oxidoreductase C1773.04 OS=Schizosaccharomyces pombe GN=SPBC1773.04 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 70/244 (28.69%), Postives = 114/244 (46.72%), Query Frame = -3 
Query:  195 KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSMAAVLN-TGKPRTPDVVVDETWFSDPEVCKQSE------LWYPLSKTLAEDAAWKFAKEKS--IDLVTINPAMVIGPLLQ----PTLNTSAAAVLSLIKGAQTYPNVT--FGWVNVKDVANAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPT----YQV-LKEKVKNLGIEFIPVEVSLKETIESL 866
            KDP  ELL  A++G  N L + A+ P +KR V  SS AA+           V  ++ W  +P+  +++E      L Y + K L E A   F    +     + +NP +++GP+        LN S      LIKG       +  F +V+V+D+A A ++A    +   R+ +        +IVN+  + +P F+  +K A  KP+  T    Y+V     +K LG+ + P E + K+  ESL
Sbjct:   93 KDPH-ELLHIAIQGCENALIAAAQEPKVKRFVYISSEAALKGPVNYFGDGHVFTEKDW--NPKTLREAEESDDELLNYTVCKKLGERAMHAFVARNTPRFQAIALNPPLILGPVFHLQSVDNLNFSTWFFWQLIKGRYEVAPESKFFNYVDVRDLAEAQVKALTAKTDKDRFVISGGAFKNDDIVNVALKYFPQFK--DKIA--KPNGETSPCNYEVDASLSIKELGLTYRPAEETFKDATESL 329
The following BLAST results are available for this feature:
BLAST of CB293424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YGD4_SCHPO1.717e-1228.69Putative uncharacterized oxidoreductase C1773.04 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ad03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ad03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293424 ID=CB293424; Name=CB293424; organism=Citrus sinensis; type=EST; length=883bp
TTTTTTTTTTTTTTTTTATATAAAATACATATGCATACAGTACTTTAATC
TGAAACAATAAAATACCAGTAGTAACAAACAGAACATTTGATCACACCAA
ACACCATGAGTCGGAGACCTTTTATTTATGTAACTTATAATAAGACTGCG
AAGGAGCTACACAGGACTCAAAAATCAACAAATCCCTTCTCCTTCAGAGA
TTCAATTGTTTCTTTGAGGCTGACCTCCACTGGGATGAACTCGATACCCA
GGTTTTTCACTTTTTCCTTCAAAACCTGATATGTCGGAACATGTGGCTTG
TCGTCCGCACACTTTTCTGGAAGCTGGAAAGCAGGGTAAAGCTCGCGTAT
AATGTTCACAATTTCTGAATAGTGTGAAACTCTTTCAACTAAACAATATC
TTCCATTGGCTGATGGAACTTCAAATGCTTGAATATGTGCATTGGCAACA
TCTTTAACGTTAACCCATCCAAAAGTTACATTTGGGTAAGTTTGTGCTCC
TTTAATTAAGCTTAGAACTGCAGCAGCACTTGTGTTAAGTGTTGGCTGTA
AGAGAGGACCAATAACCATTGCCGGGTTAATGGTAACCAAGTCAATACTC
TTCTCCTTTGCAAATTTCCAAGCTGCATCCTCAGCCAATGTCTTTGAAAG
TGGATACCAGAGCTCTGATTGCTTGCAAACCTCCGGATCCGAGAACCAAG
TCTCATCAACTACCACATCAGGGGTTCGAGGTTTTCCAGTGTTTAAAACT
GCAGCCATTGAAGATGTTAAAACCACTCGTTTGATAGAAGGGAACTTCGC
ACATGAGTTAAGAACATTAAGAGTTCCTTTCACAGCAGGATCAAGTAACT
CCACCTGCGGATCCTTGGCATCATGGTAAAAGG
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