CB293442

Overview
NameCB293442
Unique NameCB293442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_PYRHO (Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii GN=guaB PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  469 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD---KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQ 846
            V+  A + G+ VIADGGI  SG IVKA+  GA  VM+G+ LAG+ EAPG  V  NGR+ K+YRGMGSL AM KG  +RY      K +  + +GV G V  +G+V + +   +  +K G   +GA +++
Sbjct:  320 VADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIR 448          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_AQUAE (Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus GN=guaB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = -3
Query:  388 SSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM-TKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 843
            +S A +  +P+IADGGI  SG IVKAL  GAS VM+G+ LAG+ EAPG  +Y  GR  K YRGMGSL AM ++ S  RY  +K +  + +G+ G V  KG +   +   +  ++ G   +GA +++   +  +++ +R+   T A   E  VH
Sbjct:  329 ASAAREYDIPIIADGGIRYSGDIVKALAAGASAVMLGNLLAGTEEAPGETIYYQGRAYKVYRGMGSLGAMSSRLSSDRYGQEKMEKFVPEGIEGRVPYKGKLADVVYQLVGGLRSGMGYVGARNIKELQE--KAKFVRI---TWAGYRESHVH 476          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_SHIFL (Inosine-5'-monophosphate dehydrogenase OS=Shigella flexneri GN=guaB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  388 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 825
            +G+PVIADGGI  SG I KA+  GAS VM+GS LAG+ E+PG      GR  K YRGMGSL AM+KGS  RY   D A  K + +G+ G VA KG + + I   M  ++      G  ++    D LR++   + + +GA   E  VH
Sbjct:  331 TGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI----DELRTKAEFVRI-SGAGIQESHVH 473          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_ECOLI (Inosine-5'-monophosphate dehydrogenase OS=Escherichia coli (strain K12) GN=guaB PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  388 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 825
            +G+PVIADGGI  SG I KA+  GAS VM+GS LAG+ E+PG      GR  K YRGMGSL AM+KGS  RY   D A  K + +G+ G VA KG + + I   M  ++      G  ++    D LR++   + + +GA   E  VH
Sbjct:  331 TGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI----DELRTKAEFVRI-SGAGIQESHVH 473          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_ECO57 (Inosine-5'-monophosphate dehydrogenase OS=Escherichia coli O157:H7 GN=guaB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  388 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 825
            +G+PVIADGGI  SG I KA+  GAS VM+GS LAG+ E+PG      GR  K YRGMGSL AM+KGS  RY   D A  K + +G+ G VA KG + + I   M  ++      G  ++    D LR++   + + +GA   E  VH
Sbjct:  331 TGIPVIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI----DELRTKAEFVRI-SGAGIQESHVH 473          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_STAS1 (Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=guaB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = -3
Query:  457 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 834
            A + G  +IADGGI  SG I+KAL  G   VM+GS LAG+ E+PGA     GR+ K YRGMGSL AM  GS+ RY   DKA  K + +G+ G +A KGS+   I   M  V+ G    G+ +L++  +
Sbjct:  330 ARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEVFQGRQYKVYRGMGSLGAMESGSNDRYFQEDKAPKKFVPEGIEGRIAYKGSLQDTIYQLMGGVRSGMGYTGSRNLEALRE 457          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_STAAW (Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=guaB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = -3
Query:  457 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 834
            A + G  +IADGGI  SG I+KAL  G   VM+GS LAG+ E+PGA     GR+ K YRGMGSL AM KGS+ RY   DKA  K + +G+ G  A KG++   I   M  V+ G    G+  L+   +
Sbjct:  330 ARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELRE 457          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_STAAS (Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=guaB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = -3
Query:  457 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 834
            A + G  +IADGGI  SG I+KAL  G   VM+GS LAG+ E+PGA     GR+ K YRGMGSL AM KGS+ RY   DKA  K + +G+ G  A KG++   I   M  V+ G    G+  L+   +
Sbjct:  330 ARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELRE 457          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_STAAR (Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=guaB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = -3
Query:  457 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 834
            A + G  +IADGGI  SG I+KAL  G   VM+GS LAG+ E+PGA     GR+ K YRGMGSL AM KGS+ RY   DKA  K + +G+ G  A KG++   I   M  V+ G    G+  L+   +
Sbjct:  330 ARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELRE 457          
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_STAAN (Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=guaB PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = -3
Query:  457 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 834
            A + G  +IADGGI  SG I+KAL  G   VM+GS LAG+ E+PGA     GR+ K YRGMGSL AM KGS+ RY   DKA  K + +G+ G  A KG++   I   M  V+ G    G+  L+   +
Sbjct:  330 ARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELRE 457          
The following BLAST results are available for this feature:
BLAST of CB293442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
IMDH_PYRHO2.098e-2044.19Inosine-5'-monophosphate dehydrogenase OS=Pyrococc... [more]
IMDH_AQUAE2.098e-2039.22Inosine-5'-monophosphate dehydrogenase OS=Aquifex ... [more]
IMDH_SHIFL2.740e-2043.24Inosine-5'-monophosphate dehydrogenase OS=Shigella... [more]
IMDH_ECOLI2.740e-2043.24Inosine-5'-monophosphate dehydrogenase OS=Escheric... [more]
IMDH_ECO572.740e-2043.24Inosine-5'-monophosphate dehydrogenase OS=Escheric... [more]
IMDH_STAS14.673e-2045.31Inosine-5'-monophosphate dehydrogenase OS=Staphylo... [more]
IMDH_STAAW1.776e-1945.31Inosine-5'-monophosphate dehydrogenase OS=Staphylo... [more]
IMDH_STAAS1.776e-1945.31Inosine-5'-monophosphate dehydrogenase OS=Staphylo... [more]
IMDH_STAAR1.776e-1945.31Inosine-5'-monophosphate dehydrogenase OS=Staphylo... [more]
IMDH_STAAN1.776e-1945.31Inosine-5'-monophosphate dehydrogenase OS=Staphylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ae01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293442 ID=CB293442; Name=CB293442; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTAAAGTCAAAAACTCTTTATAGCAGCTCCCTAAAAAGCGT
TCCAAATTGATTCAGTGTTGTTTCACAAACATTGCGTAAAATTACCGTCT
TATTTTTCTGATGTATTTAAAATAAAACCGTTACATTATAAAATAAAATA
AAATAAAATAAGATTCTAATAATTTAAAGATGAAAACGCCGGCAACAAGT
AAGACGTGCTTGTGGGTGACTCTCTTGCAAGAGATGCAGATTGGTATACT
CAATCTTTTAGTAGATTCTGTTTACGTGACTGTTATTCATGCTAACGTAG
AACCAGGCAATAAGCAGCAGTAGCAGGAACCAAGTACTCGATCATTTTGA
AGTTTCAGAAGGATTTCTTTTCATAAGATACCAGACCATGTACTCCACCT
TCGACTTGTGCGGCTCCCGTGCGGACCTCCAGCCTTAAAGTTCTTGATCT
TAACAGGTCATGAGCGGACTGCAGGGAAGAAGCTCCAAGATCCTGGAAAC
CTTGCTTCACAGCTTGCATTGTGTATGGTATGAACTTTAAGACCGAACCT
TTATCTGCAACGGCTCCAACCACACCCTGTGCGATCTTTAATTTAGCTTT
ATCGCCTAAGTATCTTTGGTCACTTCCTTTAGTCATTGCTTCTAGAGAGC
CCATGCCTCGATATTTTTTGACCCGACGACCATTCTGATAGACGTAAGCT
CCGGGAGCTTCTGTGCTTCCAGCCAAGAAGCTTCCCATCATTACTGTAGA
TGCCCCAAGAACCAAAGCCTTAACAATGTGTCCAGAGTTTGAAATGCCAC
CATCCGCAATGACAGGTACACCACTTTGTGCAGCAATAGATGAAACCT
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