CB293459

Overview
NameCB293459
Unique NameCB293459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.645e-13
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  465 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 776
            +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  155 VDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.806e-13
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  465 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 776
            +DP  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  160 VDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.665e-13
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  465 MDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 776
            +DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  166 VDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+  TGM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVAGEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.165e-13
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++  +  E+++ R TREV PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct:  160 IDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIL (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_1798 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIK (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1717 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CB293459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_METTP1.645e-1340.37Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METVS2.806e-1338.46Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALWD3.665e-1335.43Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_SULSO6.252e-1338.24Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METMP8.165e-1340.20Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIY1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIL1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIK1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIA1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ae10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ae10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293459 ID=CB293459; Name=CB293459; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTCTGATCTTAATCACATCAGCACTTTCCCATTGGCTGA
TGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGG
CAGTCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAAAT
TCACCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTA
AAATTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAAC
CTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTA
AATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGA
GTGATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAAT
CAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCG
TCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTT
CTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCAC
CATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACC
TCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGC
CTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTA
CTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACC
TTCGCTTCCATTACATTGGGATCCATG
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