CB293459

Overview
NameCB293459
Unique NameCB293459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.393e-12
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  153 VDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = -2
Query:  465 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 776
            +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  153 VDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  468 MDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 776
            +DP  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  167 VDPIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  160 IDPLTISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  170 VDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.292e-12
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  153 VDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_SULIN (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1140 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.179e-11
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP  + AK VV + GHD    +   +++  +G++  + G K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IAGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB293459 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  471 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 776
            +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  153 VDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
The following BLAST results are available for this feature:
BLAST of CB293459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_PYRIL1.393e-1237.25Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METM72.376e-1238.24Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRCJ4.052e-1233.65Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_NATPD4.052e-1236.51Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METM64.052e-1237.25Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM54.052e-1237.25Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALMA4.052e-1234.92Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_PYRAE5.292e-1235.29Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULIN1.179e-1136.27Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_THENV1.540e-1135.29Putative thiazole biosynthetic enzyme OS=Thermopro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ae10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ae10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293459 ID=CB293459; Name=CB293459; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTCTGATCTTAATCACATCAGCACTTTCCCATTGGCTGA
TGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGG
CAGTCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAAAT
TCACCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTA
AAATTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAAC
CTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTA
AATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGA
GTGATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAAT
CAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCG
TCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTT
CTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCAC
CATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACC
TCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGC
CTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTA
CTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCACC
TTCGCTTCCATTACATTGGGATCCATG
back to top