CB293498

Overview
NameCB293498
Unique NameCB293498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  142 AGATVGEVTEVNKDTFWPIV---KAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 450
            A    GEV  V+    W +      A  K VV+D    WCGPC+++AP F +LA+K+   +FLK+D + E K +A++  +  +PTF  +K+  V   V GA  E+L
Sbjct:   13 AAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVD-ELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 117          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = -3
Query:  142 KTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 375
            K VV+D    WCGPC+ IAP   ++A+K   VIFLK+D + E K+++ E  +  +PTF  +KD K V  V GAK E+L
Sbjct:   35 KLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVD-ELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEEL 111          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  133 IVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA---KLEDLVFA 396
            + KA+G K VVLD +  WCGPCK+I+PK  EL+ +Y+D V+ LK+D + E + +A E  I  +PTF  LK+   V+E  GA   +LED++ A
Sbjct:   15 LTKASG-KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVD-ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKA 104          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 38/105 (36.19%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  139 ATVGEVTEVNKDTFWPI-VKAAGD--KTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLV 444
            A  GEV   +    W   +KAA +  K +V+D    WC PC+ IAP F +LA+K+ DV+F K+D ++ N ++A+E  ++ +PTF  +K+ ++ + V GA  E+++
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELN-TVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEII 105          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  157 VTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA 429
            VT++   + +    A+GDK VV+D +  WCGPCK+IAP  ++ A++YSD  F KLD + E   +A++  +  +PT    K  K V  V GA
Sbjct:    2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVD-EVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGA 91          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = -3
Query:  142 VVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 369
            +V+D    WCGPC+ IAP   ELA+K  +V FLK+D + E K++A E  +  +PTF  LK+ K++ +V GAK ++L
Sbjct:   31 IVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVD-ELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDEL 105          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -3
Query:  142 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 417
            +K+ F  ++K AG+K V +D    WCGPC+ + P F  L+ K+ DVIFL++D  ++ + L ++  +  +PTF+  K+ + V E +GA +E L
Sbjct:  452 DKEEFEEVLKDAGEKLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVD-TEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKL 542          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  142 VNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 420
            ++K+ F   +K AG++ V +D    WCGPC+ I P F  L+ K+ DV+FL++D +   + + +E  I  VPTF+  K  + V E+ GA  E L
Sbjct:  454 LSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDAD-NCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKL 545          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  115 DKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRS 378
            +K +V+D    WCGPC++I P    +A K++DV F+KLD + E   +AKE  +  +PTF ++K  K ++ + GAK ++L   +  +R+
Sbjct:   47 NKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVD-ELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKLRA 133          
BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  133 IVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGA---KLEDLVFA 396
            + KA+G K VVLD +  WCGPCK+I+PK  EL+ +++D V+ LK+D + E + +A E  I  +PTF  LK+   V+E  GA   +LED++ A
Sbjct:   23 LTKASG-KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD-ECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 112          
The following BLAST results are available for this feature:
BLAST of CB293498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRXH_WHEAT6.673e-1336.79Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH1_TOBAC8.715e-1346.15Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
THIO2_DROYA8.715e-1345.65Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRXH3_ARATH1.138e-1236.19Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRX2_YEAST1.138e-1239.56Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
TRXH_RICCO1.942e-1244.74Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TXND2_RAT2.536e-1236.96Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
TXND2_HUMAN3.312e-1237.63Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TRXH2_ARATH3.312e-1236.36Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO2_DROME3.312e-1244.57Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ag09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ag09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293498 ID=CB293498; Name=CB293498; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTTTTTTTTTACTACAGTGGAACAATCAATTATTCCCTAGCAC
GTACACATTGTTGATCATATTGTTTATAGTTTACAGGAGAAATAATAGGA
AAGAATTTTCAACTGGATCTAACAGCATCAATGGCGAAAACTAGGTCTTC
CAATTTGGCCCCCGTCACTTCCTTTACAACCTTATTGTCTTTCAGAATCT
TGAAAGTAGGAACAACCCTTATTCCAAGCTCTTTCGCCAATGACTTGTTC
TCTTGGTTGCAATCAAGCTTTAGAAATATAACATCGGAGTACTTTTGGGC
CAATTCTTGAAATTTTGGAGCTATCACTTTACAAGGACCACACCATTGAG
TGTACATATCAAGAACAACAGTCTTATCACCGGCGGCCTTAACGATGGGC
CAAAAAGTATCCTTATTTACTTCAGTGACCTCTCCCACTGTGGCCCCCGC
AATCTCCAAGCTCGATCTCACCGTGAAAACACCGCCGTTTAGCTGCTTAT
TGCTCTTCTTATTCGCCTTCTTCGCTACTAATGACGAGGAGTAAGAGCCG
GTTCTTGAGCTTGAGACTCCCGCTGAGAAAGCAGAGGCTGTGCCTCGTG
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