CB293498

Overview
NameCB293498
Unique NameCB293498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293498 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = -3 
Query:  142 VKAA--GDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 393
            +KAA   +K +V+D    WC PC+ IAP F ELA+K+ DV+F K+D + E  ++A+E  ++ +PTF  +K  + + +V GA  E++
Sbjct:   26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVD-ELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110
The following BLAST results are available for this feature:
BLAST of CB293498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRXH1_BRANA4.782e-1139.53Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ag09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ag09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293498 ID=CB293498; Name=CB293498; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTTTTTTTTTTTACTACAGTGGAACAATCAATTATTCCCTAGCAC
GTACACATTGTTGATCATATTGTTTATAGTTTACAGGAGAAATAATAGGA
AAGAATTTTCAACTGGATCTAACAGCATCAATGGCGAAAACTAGGTCTTC
CAATTTGGCCCCCGTCACTTCCTTTACAACCTTATTGTCTTTCAGAATCT
TGAAAGTAGGAACAACCCTTATTCCAAGCTCTTTCGCCAATGACTTGTTC
TCTTGGTTGCAATCAAGCTTTAGAAATATAACATCGGAGTACTTTTGGGC
CAATTCTTGAAATTTTGGAGCTATCACTTTACAAGGACCACACCATTGAG
TGTACATATCAAGAACAACAGTCTTATCACCGGCGGCCTTAACGATGGGC
CAAAAAGTATCCTTATTTACTTCAGTGACCTCTCCCACTGTGGCCCCCGC
AATCTCCAAGCTCGATCTCACCGTGAAAACACCGCCGTTTAGCTGCTTAT
TGCTCTTCTTATTCGCCTTCTTCGCTACTAATGACGAGGAGTAAGAGCCG
GTTCTTGAGCTTGAGACTCCCGCTGAGAAAGCAGAGGCTGTGCCTCGTG
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