CB293515

Overview
NameCB293515
Unique NameCB293515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TOM1_DICDI (Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.294e-16
Identity = 64/251 (25.50%), Postives = 121/251 (48.21%), Query Frame = 1
Query:  133 DMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK-IVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENS--VPFFTPP---------------QTQPIVEPTSAFDDAAIQASLQSDASGLSL-----AEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEE 816
            ++LI  DW   +++ D++N DP  A+  ++ + K+L  ++ +V LLAL   +++ +NC         ER    E+ + I+ KK  LNV+EK L ++++W  AF   R   P +Y  Y+ ++ +G +FPP+  ++  + F   P                T P      +F++ +   S  +   G S       EI   KG   V  EM+  L+ ++ +  + ++I +L + C+  Q RV  ++ + +  E
Sbjct:   12 ELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRS-RVILLALELADSLLQNC-HCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAFQA-RHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSHSTTPPQANVPSFNNVSSVGSNNAGGGGSSSQPIKNQEISSIKGSTSVFNEMISFLNVEDEDPQENDLIKELFETCKQSQIRVKEMIESGSTNE 259          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.644e-14
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK----KPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPR---AENSVPFFTPPQ 555
            D  +N+E+ DVI     Q KDA+K LKKR+G KNP VQL  L   +T  KN G    Q+I  R+ +  +  ++K      P+ +V+ K+L LI +W  A  G R         Y  L+  G  FPP+   A + +    PP+
Sbjct:   27 DMPLNLEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSWATAAEG-RMNLGYINEVYRSLQREGYHFPPKENIASSMLDSSAPPE 167          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_NEUCR (Vacuolar protein sorting-associated protein 27 OS=Neurospora crassa GN=vps-27 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.147e-14
Identity = 52/144 (36.11%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVK----KKPDLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPR---AENSVPFFTPPQ 555
            D A+N+E+ DVI     Q K+A++ LKKR+  KNP  QL AL   +T  KN G     +I  R+ +  +V ++K      P+ +VR KIL LI +W  A     GRY   Y    Y  L+  G  FPP+   A + +    PP+
Sbjct:   27 DIALNLEISDVIRSKTVQPKEAMRSLKKRINHKNPNTQLSALNLTDTCVKNGGAHFLAEIASREFMENLVGLLKAVGPAAPNPDVRNKILDLIQSWAMA---AEGRYELSYIGEVYKTLQREGYSFPPKPTVASSMIDSSAPPE 167          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_CHAGB (Vacuolar protein sorting-associated protein 27 OS=Chaetomium globosum GN=VPS27 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.663e-14
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKK----KPDLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPR---AENSVPFFTPPQ 555
            D A+N+E+ D+I     Q K+A++ LKKR+ +KNP  QL AL   +T  KN G     +I  R+ +  +V ++K       +  VR KIL LI +W  A     GRY   Y    Y  L+  G +FPPR   A + +    PP+
Sbjct:   27 DIALNLEISDIIRSKTVQPKEAMRSLKKRINNKNPNTQLSALNLTDTCVKNGGAHFLAEIASREFMESLVSLLKAVGPGTVNAEVRAKILELIQSWATA---AEGRYELGYIGEVYKTLQREGYQFPPRVTVASSMIDSNAPPE 167          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_YARLI (Vacuolar protein sorting-associated protein 27 OS=Yarrowia lipolytica GN=VPS27 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.818e-13
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLN--VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENS 531
            D A+N+E+CD+I      AKDA++ LK+RL ++NP VQL AL   +   KN G     +I  R+ +  ++ I  +  D N  VR+++L L+  W  AF G + +  Q   A  +L+S GV FP  + ++
Sbjct:   28 DLALNLEICDLIRSKTVPAKDAMRSLKRRLLNRNPNVQLAALQLTDVCIKNGGSHFLVEIASREFVDPLMAIA-RNDDANPEVRQRVLQLLQQWAVAFAG-QLQLQQVENAVTQLKSEGVSFPSASHDN 154          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_ASPCL (Vacuolar protein sorting-associated protein 27 OS=Aspergillus clavatus GN=vps27 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPRAENS 531
            D A+N+E+ D+I     Q K+A++ LK+RL ++NP VQ+  L   +T  KN G     +I  R+ L  MV ++  +    + +V+EK+L LI  W  A    +GR    Y    Y +L+S G  FPP++E S
Sbjct:   25 DIALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGTHFLAEIASREYLDNMVSLLTAEGAPLNSDVKEKMLELIQDWAMA---AQGRMDLNYLGETYRKLQSEGFRFPPKSEIS 153          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_ASPTN (Vacuolar protein sorting-associated protein 27 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=vps27 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYYA--AYNELRSAGVEFPPRAENS 531
            D A+N+E+ D+I     Q K+A++ LK+RL +KNP VQL  L   +T  KN G     +I  R+ +  +V ++K +    +  V+EK+L LI  W  A    +GR    Y    Y  L+  G  FPP+ + S
Sbjct:   25 DIALNLEISDLIRSKSVQPKEAMRSLKRRLENKNPNVQLATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKTEGLQLNTEVKEKMLELIQDWAMA---AQGRMDLSYVGQTYQRLQEEGFRFPPKTQIS 153          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_MAGGR (Vacuolar protein sorting-associated protein 27 OS=Magnaporthe grisea GN=VPS27 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVK----KKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPR---AENSVPFFTPPQ 555
            D A+N+E+ DVI       KDA++ LKKR+G KNP  QL AL   +T  KN G     +I  R+ +  +V ++K       + +VR +IL LI +W     G R         Y  L+  G +FPP+   A + +    PP+
Sbjct:   27 DIALNLEISDVIRSKTVPPKDAMRSLKKRIGHKNPNTQLSALELTDTCVKNGGQHFLVEIASREFIDNLVSLLKATGPAAVNADVRARILGLIQSWAAVTQG-RVELSYIGEVYKTLQHEGFQFPPKVAVATSMIDSSAPPE 167          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: STAM2_HUMAN (Signal transducing adapter molecule 2 OS=Homo sapiens GN=STAM2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQY---YAAYNELRSAGVEFPPRAENSV 534
            DW++ +++CD +   P  AKD LK + KR+  K P V L AL  L     NCG     ++  RD   E+  ++K K    V EK+  L+  W E F     + PQ+    A    ++  G+ FPP    +V
Sbjct:   25 DWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKSMKEEGITFPPAGSQTV 151          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_USTMA (Vacuolar protein sorting-associated protein 27 OS=Ustilago maydis GN=VPS27 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLN--VREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAG-VEFPPRAENS 531
            D A+N+E+CD +      AK A+++LK+RL  KNP V LLAL   +   KN GD   QQ+  R+ +  ++ +++    +N  V+ K L LI  W +               Y +L+S    +FPP   N+
Sbjct:   31 DIALNLEICDQVRAKQVPAKQAMQVLKRRLSHKNPNVVLLALGLTDICIKNGGDHFLQQVASREFMDNLLSVLRNPAGVNNDVKNKALGLIQNWSQIAQAKPAHMSYITDIYQQLKSDDQFDFPPLDPNA 160          
The following BLAST results are available for this feature:
BLAST of CB293515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TOM1_DICDI2.294e-1625.50Target of Myb protein 1 OS=Dictyostelium discoideu... [more]
VPS27_PHANO1.644e-1435.21Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_NEUCR2.147e-1436.11Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_CHAGB3.663e-1435.42Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_YARLI1.818e-1335.66Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPCL6.907e-1335.61Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPTN9.021e-1334.85Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_MAGGR1.178e-1233.80Vacuolar protein sorting-associated protein 27 OS=... [more]
STAM2_HUMAN1.178e-1232.06Signal transducing adapter molecule 2 OS=Homo sapi... [more]
VPS27_USTMA1.539e-1232.31Vacuolar protein sorting-associated protein 27 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293515 ID=CB293515; Name=CB293515; organism=Citrus sinensis; type=EST; length=821bp
GCACTTTGCGTGATTTTATCTTTTTCTGATTCTCCTTCTGGGTGTTCTTC
ACTGGACACAGTGATCAGGGACTTAAGGTTCAGTACAATTATGGCTAATA
ATGCGGCAGCGTGTGCTGAGAGGGCGACTAATGACATGCTGATTGGTCCA
GACTGGGCAATAAACATTGAGTTATGCGATGTCATCAACATGGATCCTGG
GCAAGCCAAAGATGCATTGAAGATACTGAAGAAGCGCCTGGGCAGTAAAA
ATCCTAAAGTGCAATTGCTGGCTTTATTTGCATTGGAGACCATCAGCAAA
AATTGTGGTGATAGTGTATTTCAGCAGATCATTGAGCGTGATATCTTACA
TGAAATGGTTAAAATAGTAAAGAAGAAGCCAGACTTGAATGTGAGGGAAA
AGATTCTTATTTTAATTGATACGTGGCAAGAAGCTTTTGGGGGGCCGAGG
GGAAGGTATCCCCAATATTATGCTGCATATAATGAACTGAGGTCTGCTGG
AGTTGAATTCCCACCTCGGGCTGAGAATAGTGTACCATTCTTCACCCCAC
CACAAACCCAGCCAATAGTAGAACCTACTTCTGCATTTGATGATGCTGCT
ATACAGGCCTCCCTGCAGTCAGATGCTTCTGGCCTCAGCCTGGCAGAGAT
TCAAAGGGCTAAGGGACTAGCTGATGTGTTAATGGAAATGCTTGGTGCCT
TGGATTCCAAGAATCCTGAGGCTGTGAAGCAAGAAATAATTGTTGACCTT
GTTGATCAATGCCGTTCGTACCAAAAACGTGTCATGCTTCTTGTGAATAA
TACTGCAGATGAGGAACTTCT
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