CB293515

Overview
NameCB293515
Unique NameCB293515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: HRS_DROME (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster GN=Hrs PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  148 PDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPF 540
            PDW   + +CD IN      K+A   +KK++ S NP     +L  LE+I KNCG  V +++  ++        ++  P  NVR+K+L L+ TW  AF     +Y         L++ G  FP   E    F
Sbjct:   21 PDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS-SDKYQAIKDTMTILKAKGHTFPELREADAMF 150          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_ASPNC (Vacuolar protein sorting-associated protein 27 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=vps27 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYYA--AYNELRSAGVEFPPRAENS 531
            D A+N+E+ D+I     Q KDA++ LK+RL +KNP +QL  L   +T  KN G     +I  R+ +  +V ++K +    + +V+ K+L LI  W  A    +GR    Y    Y  L+  G  FPP+ + S
Sbjct:   25 DIALNLEISDLIRSKGVQPKDAMRCLKRRLENKNPNIQLATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKTEGAPLNSDVKAKMLELIQDWAMA---AQGRMDLSYVGETYRRLQDEGFRFPPKTQIS 153          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_NEOFI (Vacuolar protein sorting-associated protein 27 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=vps27 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPRAENS 531
            D A+N+E+ D+I     Q K+A++ LK+RL ++NP VQ+  L   +T  KN G     +I  R+ +  +V ++  +    + +V+EK+L LI  W  A    +GR    Y    Y  L+S G  FPP+ E S
Sbjct:   25 DIALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMA---AQGRMDLNYLGETYRRLQSEGFRFPPKNEIS 153          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_ASPFU (Vacuolar protein sorting-associated protein 27 OS=Aspergillus fumigatus GN=vps27 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPRAENS 531
            D A+N+E+ D+I     Q K+A++ LK+RL ++NP VQ+  L   +T  KN G     +I  R+ +  +V ++  +    + +V+EK+L LI  W  A    +GR    Y    Y +L++ G  FPP+ E S
Sbjct:   25 DMALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMA---AQGRMDLNYLGETYRKLQNEGFRFPPKNEIS 153          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: VPS27_EMENI (Vacuolar protein sorting-associated protein 27 OS=Emericella nidulans GN=vps27 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKP---DLNVREKILILIDTWQEAFGGPRGRYPQYY--AAYNELRSAGVEFPPRA 522
            D A+N+E+ D+I     Q KDA++ LK+RL +KNP +Q+  L   +T  KN G     +I  R+ +  +V ++K +    + +VR+ +L LI  W  A    +GR    Y    Y +L+  G +FPP++
Sbjct:   25 DIALNLEISDLIRSKGVQPKDAMRSLKRRLENKNPNIQIATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKAEGVPLNSSVRDLMLALIQDWAMA---AQGRMDLSYLGETYRKLQMEGFQFPPKS 150          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: STAM2_MOUSE (Signal transducing adapter molecule 2 OS=Mus musculus GN=Stam2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQY---YAAYNELRSAGVEFPPRAENSV 534
            DW++ +++CD +   P  AKD LK + KR+  K P V L AL  L     NCG     ++  RD   E+  ++K K    V EK+  L+  W E F     + PQ+    A    ++  GV FP     +V
Sbjct:   25 DWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKSMKEEGVTFPSAGSQTV 151          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: STAM2_RAT (Signal transducing adapter molecule 2 OS=Rattus norvegicus GN=Stam2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQY---YAAYNELRSAGVEFPPRAENSV 534
            DW++ +++CD +   P  AKD LK + KR+  K P V L AL  L     NCG     ++  RD   E+  ++K K    V EK+  L+  W E F     + PQ+    A    ++  GV FP     +V
Sbjct:   25 DWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKAMKEEGVTFPSAGSQTV 151          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: YD85_SCHPO (Probable ADP-ribosylation factor-binding protein C1F3.05 OS=Schizosaccharomyces pombe GN=SPAC1F3.05 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 65/235 (27.66%), Postives = 105/235 (44.68%), Query Frame = 1
Query:  148 PDWAINIELCDVINMDPGQA-KDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDL---NVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS----AGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQS---DASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRV-MLLVNNTADEE 816
            P+ A+NIE+ D+IN   G   ++A  ++ KR+ S NP V  LAL  L+   KNCG     QI   + L+  V      P      ++ K+L +++ W         R+ + ++  +++R      G +FP   E+S+    P  +    +  +  D  A +A LQ      + + LAE       A+ LM+++   D +N E        DL +  RS   RV   LVN T   E
Sbjct:   22 PNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSYLALHLLDICVKNCGYPFHFQIASEEFLNGFVSRFPNHPISRMNKIQSKMLEMLEEWNYML-CKNNRHREDFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRRGTPMDLAE-------ANALMKVIAGYDEENTEDYSALAAADL-ESIRSKALRVKQFLVNQTVSLE 247          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TM1L1_HUMAN (TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 64/238 (26.89%), Postives = 109/238 (45.80%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRLGSK-NPKVQLLALFALETISKNCGDSVFQQIIERDILHE-MVKIVKKKPD--LNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPP--------RAENSVPFFTPPQTQPIVEP-TSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEML--GALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DW   + +CD+IN      KDA+K LKKR+    N K   L L  ++   +NCG S    I++++ + E +VK++  + +  L+++ +IL  I TW + F G      +    Y +L   GV+FPP        R E +     PP + P     +S         +L  +  G   +E+   K    V+  +L      S+N E +  E++  L    R  Q+R+M L+    +E++
Sbjct:   31 DWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVD-VSEVKEVYLDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIGKLHSELDMVKMNVRVMSAILMENTPGSENHEDI--ELLQKLYKTGREMQERIMDLLVVVENEDV 265          
The following BLAST results are available for this feature:
BLAST of CB293515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
HRS_DROME1.539e-1231.30Hepatocyte growth factor-regulated tyrosine kinase... [more]
VPS27_ASPNC2.010e-1234.09Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_NEOFI3.428e-1234.09Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPFU3.428e-1233.33Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_EMENI4.477e-1233.33Vacuolar protein sorting-associated protein 27 OS=... [more]
STAM2_MOUSE7.637e-1232.06Signal transducing adapter molecule 2 OS=Mus muscu... [more]
STAM2_RAT1.303e-1132.06Signal transducing adapter molecule 2 OS=Rattus no... [more]
YD85_SCHPO1.701e-1127.66Probable ADP-ribosylation factor-binding protein C... [more]
TM1L1_HUMAN2.902e-1126.89TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293515 ID=CB293515; Name=CB293515; organism=Citrus sinensis; type=EST; length=821bp
GCACTTTGCGTGATTTTATCTTTTTCTGATTCTCCTTCTGGGTGTTCTTC
ACTGGACACAGTGATCAGGGACTTAAGGTTCAGTACAATTATGGCTAATA
ATGCGGCAGCGTGTGCTGAGAGGGCGACTAATGACATGCTGATTGGTCCA
GACTGGGCAATAAACATTGAGTTATGCGATGTCATCAACATGGATCCTGG
GCAAGCCAAAGATGCATTGAAGATACTGAAGAAGCGCCTGGGCAGTAAAA
ATCCTAAAGTGCAATTGCTGGCTTTATTTGCATTGGAGACCATCAGCAAA
AATTGTGGTGATAGTGTATTTCAGCAGATCATTGAGCGTGATATCTTACA
TGAAATGGTTAAAATAGTAAAGAAGAAGCCAGACTTGAATGTGAGGGAAA
AGATTCTTATTTTAATTGATACGTGGCAAGAAGCTTTTGGGGGGCCGAGG
GGAAGGTATCCCCAATATTATGCTGCATATAATGAACTGAGGTCTGCTGG
AGTTGAATTCCCACCTCGGGCTGAGAATAGTGTACCATTCTTCACCCCAC
CACAAACCCAGCCAATAGTAGAACCTACTTCTGCATTTGATGATGCTGCT
ATACAGGCCTCCCTGCAGTCAGATGCTTCTGGCCTCAGCCTGGCAGAGAT
TCAAAGGGCTAAGGGACTAGCTGATGTGTTAATGGAAATGCTTGGTGCCT
TGGATTCCAAGAATCCTGAGGCTGTGAAGCAAGAAATAATTGTTGACCTT
GTTGATCAATGCCGTTCGTACCAAAAACGTGTCATGCTTCTTGTGAATAA
TACTGCAGATGAGGAACTTCT
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