CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 38/115 (33.04%), Postives = 55/115 (47.83%), Query Frame = -2
Query:  521 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 865
            I G   T + GG +   + +P+ YP+ PP VKF    +HPNVYP G +C+SIL+   D           W P  T++           SPN  SPA   A + +   + ++ KKV
Sbjct:   45 IPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 40/133 (30.08%), Postives = 56/133 (42.11%), Query Frame = -2
Query:  467 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML*TNCRHS 865
            I GP DT+Y  G FN  +  P  YP  PP V F T I+HPN+   GR+C+ IL+ P   P G       W P   +             PN +     E ++E++  R  F  K      +  ++    C  S
Sbjct:   51 IEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLP---PKG------AWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYAKVKADGCSTS 174          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = -2
Query:  503 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 868
            TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   36 TIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRK 144          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 36/114 (31.58%), Postives = 54/114 (47.37%), Query Frame = -2
Query:  524 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKK 865
            I GP  T YEGG FN  + FP++YP  PP   F T I+HPN+  +G +C++IL              ++W P   VE            PN + P   E  + +++ R  F ++
Sbjct:   43 IRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL-------------KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQR 143          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = -2
Query:  566 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEA 865
            I GPPDT YE G F   +S P+NYP  PPT+KF T+I+HPN+ +  G +C+ +L                W  ++T++            P  +SP N +A
Sbjct:   37 IKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLL-------------KTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDA 124          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 36/113 (31.86%), Postives = 53/113 (46.90%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPNV  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   36 TIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            T +GP D++Y GG F+  + FP +YP  PPT++FTT I+HPN   +G VC++I            L  + + P   +             PN + P     A+++R+ R  F K
Sbjct:   42 TALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI------------LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 40/120 (33.33%), Postives = 53/120 (44.17%), Query Frame = -2
Query:  506 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 865
            II P +  Y  G F       SNYP+ PP VK  T+++HPN+  DG VC++IL              E W PV  +             PN E P N EAA   +  R  F+  V + +R
Sbjct:   60 IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILR-------------EDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMR 166          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 34/113 (30.09%), Postives = 54/113 (47.79%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  ++ ++
Sbjct:   36 TIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = -2
Query:  503 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPA-NVEAAKEWRDRRDDFKKKVGRCVRR 862
            + P + +Y GG F   ++ P  Y N PP VK  T++WHPN+  DG +C+SIL     D  G       W P   +               D + A N++AA+ W   R+ F  +V   + R
Sbjct:   65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYG-------WRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC9_YEAST6.376e-1233.04SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC37_ARATH6.376e-1230.08Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC1_COLGL6.376e-1230.33Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC31_ARATH1.420e-1131.58Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBCX_DICDI1.855e-1134.65Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC28_ARATH1.855e-1131.86Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC14_SCHPO1.855e-1131.58Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC12_DROME1.855e-1133.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC9_ARATH2.423e-1130.09SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC12_CAEEL3.164e-1130.58NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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