CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 38/121 (31.40%), Postives = 55/121 (45.45%), Query Frame = -2
Query:  503 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 862
            + P +  Y+GG F   +  P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N   P N+EAA+     ++DF+ KV   +RR
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTG-------WAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRR 182          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   36 TIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = -2
Query:  506 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 865
            +I P +  Y+GG F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+             PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = -2
Query:  506 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 865
            +I P +  Y+GG F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+             PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 34/113 (30.09%), Postives = 53/113 (46.90%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   36 TIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 37/121 (30.58%), Postives = 55/121 (45.45%), Query Frame = -2
Query:  503 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTV-EXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 862
            + P +  Y+GG F      P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T+ +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKR 182          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 36/107 (33.64%), Postives = 50/107 (46.73%), Query Frame = -2
Query:  548 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRD 868
            TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              E+W  ++ V             PN +SP N  AA+ W++
Sbjct:   65 TIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 33/113 (29.20%), Postives = 54/113 (47.79%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            +I+GPPD+ Y GG F   + FP++YP  PP +  TT+I+HPN+  +G +C+ IL              ++W P  T+              N + P   E A  ++  R  ++
Sbjct:   36 SIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYE 135          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 35/109 (32.11%), Postives = 51/109 (46.79%), Query Frame = -2
Query:  542 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRR 868
            TI+GP D+ + GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  TV             PN + P   E A  ++  R
Sbjct:   36 TIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDIL-------------KEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDR 131          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 33/113 (29.20%), Postives = 54/113 (47.79%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  ++ ++
Sbjct:   36 TIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UB2FB_MOUSE3.164e-1131.40NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBC4_SOLLC4.133e-1130.97Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC12_XENTR5.397e-1132.50NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA5.397e-1132.50NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC8_ARATH7.049e-1130.09Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBE2F_RAT9.206e-1130.58NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2C_HUMAN9.206e-1133.64Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC4_CANAL9.206e-1129.20Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC30_ARATH9.206e-1132.11Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC10_ARATH9.206e-1129.20Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
back to top