CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.372e-27
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = -2
Query:  542 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAA---KEWRDRR 865
            I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P   V             PN  SPANV+A+   ++W++ +
Sbjct:   45 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.496e-24
Identity = 57/119 (47.90%), Postives = 74/119 (62.18%), Query Frame = -2
Query:  494 DTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 850
            D++Y GGFF A M FP ++P SPP  +FT  I+HPNVY DGR+CISILH  G DP   E  +E W PV TVE            PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   52 DSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.257e-24
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  500 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 859
            GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   39 GPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.257e-24
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  500 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 859
            GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   39 GPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  500 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 859
            GP DTLYEGG F A + FP NYP  PP + FT+E+WHPN+Y DGRVCISILH    +  G       W PV  ++            PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   39 GPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.239e-23
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  500 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 859
            GP DT YEGG F A ++FP NYP  PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   +E            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   39 GPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.336e-22
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  500 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 859
            GPPDTLYEGG F A + FP  YP  PP + FT+E+WHPN+Y DG++CISILH    +  G       W P   ++            PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   39 GPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.085e-19
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = -2
Query:  488 DTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL-HPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 850
            D+LY G    A+M FPS+YP  PPT+KF ++++HPN+Y DG++CISIL      D + +    ++W PV  +            SPN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:   77 DSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.851e-19
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.851e-19
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  +M F   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   40 IIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UB2R1_HUMAN5.372e-2749.55Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC3_YEAST2.496e-2447.90Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFWA4.257e-2442.40Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFB74.257e-2442.40Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP47.261e-2444.00Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK51.239e-2342.40Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM22.336e-2240.80Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
Y1A1_ENCCU1.085e-1939.34Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC2_YEAST1.851e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_NECHA1.851e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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