CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.851e-19
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT YE G F  ++ F  +YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   40 IIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.851e-19
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.417e-19
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY +G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V RS E
Sbjct:   40 IIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.417e-19
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT YE G F  ++ F   YPN PP VKF +E++HPNVY +G +C+ IL               RW P + V             PN  SPANVEAA  ++D +  + K+V   V +S E
Sbjct:   40 IIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   40 IIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            IIGP DT +E G F  I+ F   YPN PP+VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEAA  ++D R  + K+V   V  S
Sbjct:   40 IIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDIL-------------QNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.185e-19
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            IIGP DT +E G F  ++SF   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V             PN  SPANVEAA  ++D R  + K+V   V  S
Sbjct:   40 IIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDIL-------------QNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.185e-19
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   40 IIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.200e-18
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN  AA+ +++ R +++K+V  CV +S
Sbjct:   40 IFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL-------------QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.567e-18
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  +M F   YPN PP+VKF +E++HPNVY  G +C+ IL               RW P + V             PN  S ANVEA+  ++D R ++ K+V   V +S E
Sbjct:   40 IIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC2_CANGA1.851e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO1.851e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_TRIHA2.417e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_KLULA2.417e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_EMENI4.123e-1939.52Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_DEBHA4.123e-1940.16Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_CANAL9.185e-1940.16Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_ASPFU9.185e-1938.71Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBCD6_DROME1.200e-1836.89Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_NEUCR1.567e-1838.71Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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