CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18
Identity = 45/122 (36.89%), Postives = 62/122 (50.82%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            IIGP +T +E G F  ++ F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V             PN  SPANVEA+  ++D R  ++K+V   V  S
Sbjct:   40 IIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDIL-------------QNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEAS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = -2
Query:  494 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 865
            IIGP DT +E G F  ++SF   YPN PP VKF + ++HPNVY +G +C+ IL               RW P + V             PN+ SPAN EAA+  R+ + ++ ++V + V  S E
Sbjct:   40 IIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSWE 150          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.776e-18
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ +KV   V +S
Sbjct:   40 IFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT +E G F  +++F  +YPN PPTVKF ++++HPNVY +G +C+ IL               RW P + V             PN  SPAN EAA  +R+   ++ ++V   V  S
Sbjct:   40 IFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEAS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F  ++ F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC2_YARLI5.954e-1836.89Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_SCHPO5.954e-1837.10Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_WHEAT7.776e-1834.43Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_USTMA2.262e-1736.07Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_MEDSA2.955e-1733.61Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2B_RAT3.859e-1734.43Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT3.859e-1734.43Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE3.859e-1734.43Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.859e-1734.43Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN3.859e-1734.43Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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