CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI GP DT YEG  F   MSFP+NYP SPPT+ FT+ +WHPNV   G +C+ IL              ++W  V+ V+            PN+ SP N +AA+ W     ++K+
Sbjct:   64 TITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.040e-17
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT ++GG F   + F  +YPN PP V+F + ++HPN+Y DG +C+ IL               +W P++ V             PN +SPAN EAA+ + + + ++ +KV   V +S
Sbjct:   40 IFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.040e-17
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP +T +E G F   + F   YPN PPTVKF ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN  AA+ +++ R +++K+V + V +S
Sbjct:   40 IFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDIL-------------QNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.040e-17
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP DT ++GG F   + F  +YPN PPTV+F + ++HPN+Y DG +C+ IL               +W P++ V             PN  SPAN EAA+ + + + ++ ++V   V +S
Sbjct:   40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.583e-17
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP D+++EG  F   + F   YPN  PTVKF ++++HPNVY DG +C+ IL               +W P++ +             PN  SPAN E+A+ +R+ + ++ +KV   V +S
Sbjct:   40 IFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL-------------QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GP  T +E G F   + F   YPN PPTV+F ++++HPNVY DG +C+ IL               RW P + V             PN  SPAN +AA+ +++ + +++K+V   V +S
Sbjct:   40 IFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  500 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRS 865
            I GPP+T +E G F   ++F   YPN PPTV+F ++++HPN+Y +G +C+ IL               RW P + V             PN  SPANV+AA+ +++   +++++V + V  S
Sbjct:   40 IFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL-------------QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELS 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 43/118 (36.44%), Postives = 57/118 (48.31%), Query Frame = -2
Query:  512 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRC 865
            I GP DT Y G  F   + FP NYP  PP +KF + +WHPNV   G +C+ IL              E+W  V+ VE            PN+ SP N  AA+ W    ++++KKV  C
Sbjct:   45 ITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDIL-------------KEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLAC 149          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC2_ARATH3.859e-1733.61Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC11_SCHPO3.859e-1738.60Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC3_ARATH5.040e-1733.61Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC1_CAEEL5.040e-1736.07Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC1_ARATH5.040e-1733.61Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI6.583e-1733.61Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2A_MOUSE8.597e-1734.43Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN8.597e-1734.43Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_CRYNE1.123e-1633.61Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC11_YEAST3.267e-1636.44Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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