CB293516 | Citrus Genome Database

Overview


Name	CB293516
Unique Name	CB293516
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	869

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 41/115 (35.65%), Postives = 55/115 (47.83%), Query Frame = -2

Query:  521 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 865
            I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  EA   +   R +++K+V
Sbjct:   45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRV 148

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GPP++ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = -2

Query:  521 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 865
            I G  DT++EGG +   M F  ++P++PP  KF   ++HPNVYP G VC+S+L    D           W P  +++            PN E PA  EA + +   R +++K+V
Sbjct:   45 IPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-----------WKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRV 148

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT+I+HPN+  +G +C+ IL               +W P  TV             PN + P   E A  ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNR 136

[Close]

BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2

Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136

The following BLAST results are available for this feature:

BLAST of CB293516 vs. ExPASy Swiss-Prot

BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121


Match Name	E-value	Identity	Description
UB2D3_PONAB	4.415e-13	32.46	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	4.415e-13	32.46	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	4.415e-13	32.46	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	4.415e-13	32.46	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D2_PIG	4.415e-13	32.46	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]
UBC9_PAGMA	5.767e-13	35.65	SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub...	[more]
UBC2_CAEEL	5.767e-13	31.58	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi...	[more]
UBC9_CAEEL	9.836e-13	33.04	SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele...	[more]
UB2D4_HUMAN	1.285e-12	32.46	Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens...	[more]
UB2D2_XENLA	1.285e-12	31.58	Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA