CB293516

Overview
NameCB293516
Unique NameCB293516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+             PN + P   E A+ ++  R+ + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 40/114 (35.09%), Postives = 53/114 (46.49%), Query Frame = -2
Query:  524 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKK 865
            I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T+             PN + PA  EA   +   R +++K+
Sbjct:   45 IPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKR 147          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = -2
Query:  503 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 868
            TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   36 TIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRK 144          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 36/114 (31.58%), Postives = 55/114 (48.25%), Query Frame = -2
Query:  527 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 868
            TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +  +C+ IL               +W P  T+             PN + P   E A+ ++  RD + +
Sbjct:   36 TIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 38/115 (33.04%), Postives = 56/115 (48.70%), Query Frame = -2
Query:  521 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 865
            I G   T +EGG +  IM F  +YP+ PP  +F  + +HPNVYP G VC+SIL+   D           W P  T++           +PN +SPA       +   ++++ KKV
Sbjct:   45 IPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEAD-----------WKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKV 148          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = -2
Query:  503 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 868
            TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+             PN + P   E A  ++  R  ++       R+
Sbjct:   36 TIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144          
BLAST of CB293516 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 35/113 (30.97%), Postives = 54/113 (47.79%), Query Frame = -2
Query:  530 TIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 868
            TI+GPP++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+             PN + P   E A  ++  R  ++
Sbjct:   36 TIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 135          
The following BLAST results are available for this feature:
BLAST of CB293516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UB2D2_RAT1.285e-1231.58Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.285e-1231.58Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.285e-1231.58Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.285e-1231.58Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC9_MESAU1.678e-1235.09SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC1_MAGGR2.191e-1230.33Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D3_BOVIN2.862e-1231.58Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC9_DICDI4.882e-1233.04Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC4_SCHPO4.882e-1230.33Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC11_ARATH4.882e-1230.97Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293516 ID=CB293516; Name=CB293516; organism=Citrus sinensis; type=EST; length=869bp
TTTTTTTTTTTTAAGCAGAAAGGAGCACGACGGCTACTACCTTCTGACCA
AGCGTAACAACAATAGCACATTAAAGAGGAGTGTAAGAATTAATGAGTAA
AAAATCAGACAAAAATATCTAAAAGAAAACATCTAATGCTTGTGGGCTCG
GTAAGATTCAAAAGCAGCAAAGATCACGGTGGAATCCTTTTGAAATCAAA
CCACAAGCCATTCTGAGTAGAGCAATCTTCAGACGAACTTAGAGAACGAC
AGAACATTTGTGATTAAAACTAACCAAAGAACGCTTTTGAATACATGGAT
GTTCCCAGTCGTTACAGTGACTTGACCATGCAGAGAAAACGAGAGAGATG
GTTGAGAGAACTTCAAAATGCCAGTCTACACAAGACCAAGTACCCACAGA
ACCCAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACA
TAGGTAGAGAAAAAAAAGAGTGCCTGCAGTTGGTTTACAACATTTCTTGT
GATCTTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTC
TCTCCATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGAC
TGGAAAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACA
GGCATCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGG
AGGATGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGAT
GCCAAATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTT
GATGGAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATC
AGGTGGTCCAATAATTGTA
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