CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  465 NAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 782
            +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +       + + YN  +R
Sbjct:  134 HALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIR 247          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  465 NAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 782
            +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +       + + YN  +R
Sbjct:  132 HALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIR 245          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  516 NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 800
            +N+  W   + G   T +   T++L ++F E YP + P V FVS    HP+IY++G ICLDIL + WSP   V ++  SI S+L   P    PA+++
Sbjct:   41 DNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADND 137          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.718e-11
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  462 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARLFSENKREYNRRVRE 803
            +  + +   +I GP DTP+  G F+  + F +DYP+ PP V        S  F+PN+Y DG +CL IL       + +W+P       +L S+QSL+   +P  N P    S      +++ REY+  +R+
Sbjct: 4575 EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 4705          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  552 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 809
            P + NI+ W+ VI GP DTP+DGG +  TL F  DYP KPP +R ++    PN     +  +CL   D   + W+P + VA IL  + S +
Sbjct:   29 PNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMIT----PNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFM 115          
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBE2Z_MOUSE1.669e-1134.48Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN1.669e-1134.48Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC15_ARATH3.718e-1138.14Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
BIRC6_HUMAN3.718e-1131.30Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBC6_CANGA8.284e-1139.56Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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