CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.229e-30
Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.605e-30
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YN   RE
Sbjct:   25 PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.097e-30
Identity = 56/116 (48.28%), Postives = 81/116 (69.83%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   25 PVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.097e-30
Identity = 56/116 (48.28%), Postives = 81/116 (69.83%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   25 PVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.577e-30
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:   25 PVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.671e-30
Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP ++P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+  RE
Sbjct:   25 PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.968e-30
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++ SICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = -1 
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:   25 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UB2D2_PIG1.229e-3050.86Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBCD1_DROME1.605e-3050.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
U2D2B_RAT2.097e-3048.28Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.097e-3048.28Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D4_HUMAN3.577e-3050.00Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_CAEEL4.671e-3049.14Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_BOVIN7.968e-3050.00Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UB2D1_MOUSE1.359e-2948.28Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.359e-2948.28Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.359e-2948.28Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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