CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.661e-27
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = -1
Query:  459 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREI 809
            P+++NI  W   I G  DT ++G  ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+L+S N+ EY + V ++
Sbjct:   59 PEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWS-NQEEYRKMVEKL 174          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = -1
Query:  441 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 809
            P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E   ++WT
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARTWT 142          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  441 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 803
            + +I  W A I GP D+P+ GG F +++ F+ DYP KPP V F ++++HPNI + GSICLDIL+ QWSP    + +L SI SLL DPNPN P   E A L+  +K +Y     E   Q WT
Sbjct:   28 EEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKY-----ESTAQKWT 143          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.313e-27
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+P+ GG F L++ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++  Y    RE
Sbjct:   25 PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.313e-27
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P   ++  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:   25 PVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.245e-27
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = -1
Query:  441 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 809
            P  +++  W A I GP D+P+ GG F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   QSWT
Sbjct:   25 PTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKY-----ESTAQSWT 142          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.245e-27
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = -1
Query:  441 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 809
            P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:   25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ESTARSWT 142          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.077e-26
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P   ++  W A I GP D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:   25 PVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.077e-26
Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = -1
Query:  450 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 803
            DN++  W   I GP DTP+ G  FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA L+  +  EY ++V    E+
Sbjct:   35 DNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYEE 152          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.077e-26
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = -1
Query:  441 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 809
            P   ++  W A I GP ++P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E   +SWT
Sbjct:   25 PVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARSWT 142          
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC20_ARATH1.661e-2749.57Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC9_ARATH4.834e-2745.53SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC12_ARATH4.834e-2747.11Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SCHPO6.313e-2746.55Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_COLGL6.313e-2745.69Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC30_ARATH8.245e-2746.34Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC28_ARATH8.245e-2744.72Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC1_MAGGR1.077e-2645.69Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC11_YEAST1.077e-2645.76Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC10_ARATH1.077e-2645.53Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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