CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-25
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+P+ GG F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:   26 PVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-25
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = -1
Query:  462 NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 800
            NNI  W AVI GPD TP++GG F L+++F  DYP KPP   F + ++HPNI  +GSIC++IL+++W+P   V  +L SI  LL  PNP+ P   E  +LF  N+ ++++R RE
Sbjct:   34 NNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRARE 146          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.464e-25
Identity = 53/132 (40.15%), Postives = 81/132 (61.36%), Query Frame = -1
Query:  447 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 803
            DN+I  W  ++ GP DT ++GG FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA++  EN  E+ ++V + V +S
Sbjct:   30 DNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.524e-25
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+ +WN  I G   T W+GG + L ++FTEDYP+KPP  RF    FHPN+Y  G++CL IL  +  W P   +  +L  IQ LL +PNP SPA      LF  NK EY+++V+
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVK 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.524e-25
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+P+ GG F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:   26 PVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +N+  W A + GP DT ++   +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA ++S N+ EY + + E
Sbjct:   54 PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 168          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 48/116 (41.38%), Postives = 77/116 (66.38%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +++  W A I GP D+P+ GG F L++ F  DYP KPP +   ++++HPNI ++G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++ +++++Y    +E
Sbjct:   25 PVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKE 140          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  447 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 803
            + N+  W+  I GP DT ++GG F   + F E+YP  PPTV F S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + +N+ E+ ++V   V +S
Sbjct:   32 EKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRS 163          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.717e-25
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  447 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 803
            + NI  W+  I GP DT ++GG F   + F ++YPN PPTVRF S ++HPN+Y DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++V   V +S
Sbjct:   31 EKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKS 162          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.719e-24
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  447 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 803
            D +I  W  +I GP+DT ++GG F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN +E+ +RVR +V +S
Sbjct:   32 DKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163          
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC5_YEAST2.652e-2543.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC31_ARATH2.652e-2546.90Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC7_CAEEL3.464e-2540.15Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC9_DICDI4.524e-2545.13Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC4_YEAST4.524e-2543.97Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBE2C_SPISO7.717e-2546.55Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC4_CANAL7.717e-2541.38Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC14_ARATH7.717e-2539.39Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC13_ARATH7.717e-2540.15Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC15_SCHPO1.719e-2438.64Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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