CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.245e-24
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            ++M W   I G   T W+GG +KLT+ F E+YP +PP  RF   +FHPN+Y  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  +F ++K EY +RVR
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.245e-24
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  447 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 803
            +++   W+ +I GPD TP++GG +  TL+F  DYP  PPT++F    FHPN+Y DG++C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A +++ E++ EY R VR +  ++
Sbjct:   32 EDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC9_SCHPO2.245e-2446.02SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_SCHPO2.245e-2437.88Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC9_XENTR2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK2.933e-2444.25SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE2.933e-2444.25SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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