CB293525

Overview
NameCB293525
Unique NameCB293525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  465 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 797
            N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.830e-24
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -1
Query:  450 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 809
            P   NI  W   I GP +T + G T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA ++++ K EY + +    E+
Sbjct:   56 PDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKKYLDAFYEK 174          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.483e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  483 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 809
            P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.235e-23
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = -1
Query:  462 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 809
            P  +N   +   I GP D+P++GG F L L  T+DYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N++E   R RE
Sbjct:   27 PATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARARE 142          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.531e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  483 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 809
            P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQ 135          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.531e-23
Identity = 48/117 (41.03%), Postives = 74/117 (63.25%), Query Frame = -1
Query:  462 APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 812
            +P + N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:   28 SPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKE 144          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.531e-23
Identity = 47/110 (42.73%), Postives = 73/110 (66.36%), Query Frame = -1
Query:  483 APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 812
            +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E
Sbjct:   28 SPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.223e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  483 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 809
            P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.223e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  483 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 809
            P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CB293525 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.223e-23
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  483 PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 809
            P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
The following BLAST results are available for this feature:
BLAST of CB293525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC9A_DANRE2.933e-2444.25SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBE2C_DROME3.830e-2444.17Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2N_MACFA2.483e-2343.12Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_DICDI4.235e-2343.10Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_RAT5.531e-2343.12Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC36_ARATH5.531e-2341.03Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH5.531e-2342.73Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_PONAB7.223e-2343.12Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE7.223e-2343.12Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN7.223e-2343.12Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293525 ID=CB293525; Name=CB293525; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGAGAAAAAGGGCTTCAACAAAATCCCCTATCAC
CATAAAAATACAATGCAAGATGGCCGTTCACCCCATCCAAAAATCCGACT
AAATAATTCCAATGAAAAAGAGCTCCTCTGAGGTTGTCTTAAGACATACA
TCACTGCTTCACTGCAGCAATAATACCCCTATACAAATGCTACAGATAAA
TTACAGTTACATGAAAGATGTTGAAAAGAAGAAGATGGAAATGTTGAGAA
ATTAACAAGAGGTTCAACCAGAGCTATCTGGGAGGAAGAATCTGAAGAGA
TTCTCTAATAACAATGCACCTGAAATCAGATTGATTACGGAGTACACGAC
TATTGAACAAACCAGCCACACCAGCCCCAGTTTTCATCTTTTATTTCTAC
AGCATAACCGGCCGGTGCTTTCATTGGACTTTTAGTCGGCTGTCCAGCTT
TGCTCCACTATTTCACGCACTCTTCGGTTGTACTCTCGTTTATTCTCACT
AAACAGCCGAGCTGCTTCAGAATTTGCAGGGGAGTTTGGATTTGGATCAC
AAAGCAGCGACTGGATGGAGGTCAGTATAGCTGCAACATCATATATAGGA
CTCCACTGATTTTGTAATATATCCAGGCAGATACTTCCATCCGCATAGAT
ATTTGGATGAAACATCCGTGAAACGAACCGAACTGTTGGAGGTTTATTCG
GATAATCCTCTGTAAACTGAAGAGTCAACTTGAACGTACCTCCGTCCCAG
GGAGTATCATCAGGCCCAAAAATAACGGCGTTCCATAACATGATGTTGTT
GTCTTGAGGGGC
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