CB293537

Overview
NameCB293537
Unique NameCB293537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293537_ssr13 microsatellite CB293537_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293537_ssr296 microsatellite CB293537_ssr296:296..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig313 contig Csv1_Contig313:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 3
Query:  393 GNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTD-ISLDKAIEFDDFCHN 809
            G S   +IDE L+SRQL V G+E M ++  SN+L+ G++GLG EIAKN++LAGVKS+T+ D   V+L DLS+ F  ++ DIG+ R   +  KL ELN  V ++ L S     QLS FQ VV TD +SL+  ++ ++FCH+
Sbjct:    7 GLSAAGEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHS 146          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  414 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNH 812
            +DE+L+SRQL V G   M+R+  + +LVSG+QGLGAE+AKNL+L GV S+TLHD       DL++ F+ S+ D+ ++RA AS + L +LN AV +   T  +T++ L DFQ VV T   L++ ++    CH H
Sbjct:   10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQGLGAEVAKNLVLMGVGSLTLHDPHPTCWSDLAAQFLLSEQDLERSRAEASQELLAQLNRAVQVVVHTGDITEDLLLDFQVVVLTAAKLEEQLKVGTLCHKH 142          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  375 VPIMTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI--GKNRALASVQKLQELNNAVVLSTLTSKLTKEQ----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 830
            +P MT   +   +ID+ L+SRQ  V G   M+++  S + +SGM GLG EIAKNL+LAG+K++T+HD    + WDL +NF   ++D+   +NRA A + ++ ELN  V +S+ ++ L +      L  +Q VV T+I L    + ++FCH+H P I F
Sbjct:   29 LPTMT---TESLEIDDGLYSRQRYVLGDTAMQKMAKSCVFLSGMGGLGVEIAKNLVLAGIKALTIHDTKKCQAWDLGTNFFLCEDDVVNERNRAEAVLHRIAELNPYVQVSSSSAPLDETTDLSFLEKYQCVVLTEIKLTLQKKINNFCHSHCPPIKF 183          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 61/132 (46.21%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  414 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK-NRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCH 806
            ID+ L+SRQL     ETM+++ ++++LV G+QGLG EI K+L LAGVKSVTL+D+  VE+ DLSS F FS   +GK  RA A  QK+ +LNN V +     +L+ E L  F  VV  +  L   ++ ++FCH
Sbjct:   13 IDDALYSRQLYALSHETMKKITSTSVLVVGLQGLGIEIVKDLSLAGVKSVTLYDKELVEIKDLSSQFYFSPEQVGKVGRADACFQKVVDLNNYVRIDVHNGELSDEFLKKFNVVVLANQPLALQLKVNEFCH 144          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 65/180 (36.11%), Postives = 104/180 (57.78%), Query Frame = 3
Query:  324 VTGKEGENHSISA-----SIAEVPIMTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI--GKNRALASVQKLQELNNAVVLSTLTSKLTKEQ----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 830
            V   +GE  S S+     +   +PIM+  +    +ID+ L+SRQ  V G   M+++  S++ +SGM GLG EIAKNL+LAG+K+VT+HD    + WDL +NF  S++D+   +NRA A ++ + ELN  V +++ +    +      L  +Q VV T++ L    + +DFC +  P I F
Sbjct:    7 VAAHQGEEASCSSWGTGSTNKNLPIMSTAS---VEIDDALYSRQRYVLGDTAMQKMAKSHVFLSGMGGLGLEIAKNLVLAGIKAVTIHDTEKCQAWDLGTNFFLSEDDVVNKRNRAEAVLKHIAELNPYVHVTSSSVPFNETTDLSFLDKYQCVVLTEMKLPLQKKINDFCRSQCPPIKF 183          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: SAE1_RAT (SUMO-activating enzyme subunit 1 OS=Rattus norvegicus GN=Sae1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  429 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDKAIEFDDFCHNH 812
            + RQ+ ++G E  +RL AS +L+ GM+GLGAEIAKNLILAGVK +T+ D   V   DL + F+     +G+NRA AS+++ Q LN  V +   T  + K+     ++F AV  T  S D  I+ D  CH +
Sbjct:   22 YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDLGAQFLIRTGSVGQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTEFDAVCLTCCSKDVIIKVDQICHRN 152          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: SAE1_MOUSE (SUMO-activating enzyme subunit 1 OS=Mus musculus GN=Sae1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 54/131 (41.22%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  429 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDKAIEFDDFCHNH 812
            + RQ+ ++G E  +RL AS +L+ GM+GLGAEIAKNLILAGVK +T+ D   V   D  + F+     +G+NRA AS+++ Q LN  V +   T  + K+     + F AV  T  S D  I+ D  CH +
Sbjct:   23 YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIQTGSVGRNRAEASLERAQNLNPMVDVKVDTEDVEKKPESFFTKFDAVCLTCCSRDVIIKVDQICHRN 153          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: SAE1_BOVIN (SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  429 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDKAIEFDDFCHNH 812
            + RQ+ ++G E  +RL AS +L+ GM+GLGAEIAKNLILAGVK +T+ D   V   D  + F+     +G+NRA AS+++ Q LN  V +   T  + K+     + F AV  T  S D  ++ D  CH +
Sbjct:   19 YDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKN 149          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: SAE1_XENTR (SUMO-activating enzyme subunit 1 OS=Xenopus tropicalis GN=sae1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  429 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDKAIEFDDFCHNH 812
            + RQ+ ++G E  +RL  S +L+ GM+GLGAE+AKNLILAGVK++TL D   V   D  + F+     +G+NRA AS+ + + LN  V +   T  + ++     + F  V  T  S D  +  D  CH H
Sbjct:   17 YDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSEDSRAQFLIPSGSLGQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFDVVCLTSCSRDLLVRVDHICHKH 147          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: SAE1_PONAB (SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 52/131 (39.69%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  429 HSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQ---LSDFQAVVFTDISLDKAIEFDDFCHNH 812
            + RQ+ ++G E  +RL AS +L+ G++GLGAEIAKNLILAGVK +T+ D   V   D  + F+     +G+NRA AS+++ Q LN  V +   T  + K+     + F AV  T  S D  ++ D  CH +
Sbjct:   19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKN 149          
The following BLAST results are available for this feature:
BLAST of CB293537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
UBA1_YEAST6.557e-2747.14Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA7_HUMAN7.250e-2645.11Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_MOUSE3.046e-2439.24Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA1_DICDI1.158e-2346.21Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA6_HUMAN7.503e-2336.11Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
SAE1_RAT1.564e-2041.98SUMO-activating enzyme subunit 1 OS=Rattus norvegi... [more]
SAE1_MOUSE1.730e-1941.22SUMO-activating enzyme subunit 1 OS=Mus musculus G... [more]
SAE1_BOVIN2.259e-1940.46SUMO-activating enzyme subunit 1 OS=Bos taurus GN=... [more]
SAE1_XENTR8.584e-1938.17SUMO-activating enzyme subunit 1 OS=Xenopus tropic... [more]
SAE1_PONAB8.584e-1939.69SUMO-activating enzyme subunit 1 OS=Pongo abelii G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ba12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293537 ID=CB293537; Name=CB293537; organism=Citrus sinensis; type=EST; length=832bp
GCAAAAAACTCGCACACACACAAAAATTAAAAAAAAAAGAATTAAAAATT
CAAAAAATAAGAAAAAAAGTAATCAGAGTCTCTCTTTCTTTCAGATTCCA
TTCTTCTCTTAATCACAGTCCTAATCGCTTACTGCACTATATGCTTCCTA
GAAAGAGAGCCAGTGAAGGAGTGGTCGTTGTGAACGAAGAGACTCAAAAC
GCAGCTCAAGAAAGCCAAAACGACATCGAAATCGCAAACGCATCATCTGC
TACCAAGAAGCATCGGATCTCTGCCACGGCTGATAGTAACAACAACAGCA
GCAGCAGCAGCAGCAACAACGTAGTCACTGGAAAGGAGGGGGAGAATCAT
AGTATCAGTGCAAGCATAGCTGAAGTGCCGATCATGACTTTGGGCAATTC
AAATCAGACAGACATAGATGAAGATCTGCACAGCCGACAGCTGGCTGTGT
ATGGTCGCGAGACGATGAGGCGGCTTTTTGCTTCAAATATCCTCGTCTCC
GGGATGCAGGGTCTTGGTGCCGAAATTGCAAAGAATCTGATTCTTGCGGG
TGTCAAGTCTGTGACCTTGCACGATGAAGGGACGGTGGAGTTGTGGGATT
TGTCGAGTAATTTTGTATTTTCAGATAATGACATTGGTAAGAACAGAGCA
CTTGCTTCTGTTCAGAAGTTGCAGGAGCTCAATAATGCAGTTGTCCTTTC
TACCTTAACGTCGAAATTGACCAAAGAACAACTTTCTGATTTTCAGGCTG
TTGTCTTCACTGACATTAGTCTTGATAAAGCCATTGAGTTCGACGACTTT
TGCCACAATCATCAACCAGCTATCTCCTTCAT
back to top