CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:727..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 4.396e-57
Identity = 101/168 (60.12%), Postives = 120/168 (71.43%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 803
            +EQQLVDCAQ FNN GC GGLPSQAFEYI YN G+  E+ YPY GKDG CKF        V D  NIT+  E+ +  AV L  PVS AFEV   F  Y++G+YSS  C  TP  VNHAV+AVGYG ++G+PYW++KNSWG  WG +GYF +E GKNMCG+A CASYP+
Sbjct:  165 AEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.041e-45
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            +EQQLVDC++ +  QGCNGG  + AF+YIK N G+DTE AYPY  +DG C+F S +V        NI  G+E  LQ AV  + P+SV  +     F+FY SGVY  P C  +P  ++HAV+AVGYG E G  +WL+KNSW  +WGD GY KM   + N CGIAT ASYP+V
Sbjct:  155 AEQQLVDCSRPYGPQGCNGGWMNDAFDYIKANNGIDTEAAYPYEARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSC--SPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVASYPLV 323          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.118e-43
Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 803
            SEQ LVDC++   NQGCNGGL  QAF+Y++ NGG+D+EE+YPYT KD   C++ +E         V+I  G E  L  AV  V PVSVA +     F+FY+SG+Y  P C +   D++H V+ VGYG E G  YW++KNSWGE WGD GY  M    KN CGIAT ASYP+V
Sbjct:   49 SEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSE--DLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKDRKNHCGIATAASYPLV 218          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.793e-42
Identity = 84/172 (48.84%), Postives = 109/172 (63.37%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC+  + N GCNGGL   AF YIK NGG+DTE++YPY G D  C F+   +G      V+I  G E++++ AV  + PVSVA +   + F+ Y  GVY+ P+C    +D  H V+ VGYG  E G+ YWL+KNSWG  WG+ GY KM   + N CGIAT +SYP V
Sbjct:  170 SEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLD--HGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGIATASSYPTV 339          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.518e-41
Identity = 81/171 (47.37%), Postives = 114/171 (66.67%), Query Frame = -1
Query:  294 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVVA 803
            SEQQLVDC+  + N GC+GGL   A++Y+K   GL+TE +YPYT  +G C+++ +    +V     +  G+E EL++ VG  RP +VA +V   F  Y+SG+Y S  C  +P+ VNHAV+AVGYG + G  YW++KNSWG  WG+ GY +M   + NMCGIA+ AS P+VA
Sbjct:  156 SEQQLVDCSGPWGNNGCSGGLMENAYQYLK-QFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTC--SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRGNMCGIASLASLPMVA 323          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.533e-41
Identity = 85/171 (49.71%), Postives = 107/171 (62.57%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQQLVDC+  + N GC GG  + AF+YIK NGG+DTE +YPY  +D  C+F + ++G     SV +    E+ LQ AV  V P+SVA +     F+FY SGVY    C  T +D  H V+AVGYG E    YWL+KNSWG +WGD GY KM   + N CGIA+  SYP V
Sbjct:  154 SEQQLVDCSTDYGNDGCGGGWMTSAFDYIKDNGGIDTESSYPYEAEDRSCRFDANSIGAICTGSVEVQ-HTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLD--HGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIASEPSYPTV 321          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.285e-40
Identity = 84/172 (48.84%), Postives = 106/172 (61.63%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC+  + N GCNGGL   AF YIK NGG+DTE++YPY   D  C F+   VG       +I  G E ++  AV  V PVSVA +   + F+FY  GVY+ P+C    +D  H V+ VG+G  E G  YWL+KNSWG  WGD G+ KM   K N CGIA+ +SYP+V
Sbjct:  202 SEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLD--HGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV 371          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.285e-40
Identity = 85/175 (48.57%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC++   NQGCNGG  ++AF+Y+K NGGLD+EE+YPY   D +CK+  EN          +  G E  L  AV  V P+SVA +     F+FYKSG+Y  P C +  +D  H V+ VGYG E    +   YWL+KNSWG  WG +GY K+   K N CGIAT ASYP V
Sbjct:  162 SEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.883e-40
Identity = 82/172 (47.67%), Postives = 109/172 (63.37%), Query Frame = -1
Query:  297 SEQQLVDCAQ-AFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQQLVDCA  ++ NQGCNGG   +A  Y++ NGG+DTE +YPY  +D  C+F+S  +G      V I  G+E  L+ A   + P+SVA +     F+ Y +GVY  P C ++ +D  HAV+AVGYG E G  +WL+KNSW  +WG+ GY KM   + N CGIAT A YP V
Sbjct:  153 SEQQLVDCAGGSYYNQGCNGGWVERAIMYVRDNGGVDTESSYPYEARDNTCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLD--HAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARNRNNNCGIATDACYPTV 322          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.051e-39
Identity = 84/175 (48.00%), Postives = 110/175 (62.86%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 803
            SEQ L+DC  +    GC+GG    AF+Y+K NGGL TEE+YPY G+   C++ +EN    V D V I  G+E+ L  AV  V P+SVA +   G F+FY SG+Y  P+C    + +NHAV+ VGYG E    DG  +WL+KNSWGE WG  GY K+     N CGIAT ++YP+V
Sbjct:  162 SEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGRECRYHAENSAANVRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGIATYSTYPIV 333          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CATH_HUMAN4.396e-5760.12Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP2_HOMAM5.041e-4551.46Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATL1_CHICK2.118e-4351.74Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATL_SARPE1.793e-4248.84Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATLL_FASHE1.518e-4147.37Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CYSP3_HOMAM7.533e-4149.71Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATL_DROME1.285e-4048.84Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL2_HUMAN1.285e-4048.57Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CYSP1_HOMAM4.883e-4047.67Digestive cysteine proteinase 1 OS=Homarus america... [more]
TEST2_RAT7.051e-3948.00Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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