CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.578e-22
Identity = 70/195 (35.90%), Postives = 104/195 (53.33%), Query Frame = -1
Query:  246 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVN----ITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPEEIVGSGYQQVI 803
            SEQ+L+DC +  +N GC GG    AFE+IK NGG+ ++E Y YTG+D     + E    +V+ ++N    + +  E  L+ AV   +P+SV     +    YKSGVY    C N   D  H V+ VGYG   D   YWLI+NSWG  WG+ GY +++         C +A    YP+ + S+   +  S ++ V+
Sbjct:  176 SEQELIDCDRGNDNFGCAGGGAVWAFEFIKENGGIVSDEVYGYTGEDTAACKAIEMKTTRVV-TINGHEVVPVNDEMSLKKAVA-YQPISVMISAAN-MSDYKSGVYKG-ACSNLWGD--HNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEPTGKCAVAVAPVYPIKSNSSSHLLSPSVFKLVV 364          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22
Identity = 61/173 (35.26%), Postives = 90/173 (52.02%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPVV 803
            SEQQ++DCA+ +   GC GG   +AFE+I  N G+ +   YPY    G CK         +     +    E  + +AV   +P++VA +    F++YKSGV++ P CG +   +NHAV A+GYG +D + Y      WG  WG+ GY +M         +CGIA    YP +
Sbjct:   50 SEQQVLDCAKGY---GCKGGWEFRAFEFIISNKGVASGAIYPYKAAKGTCKTDGVPNSAYITGYARVPRNNESSMMYAVS-KQPITVAVDANANFQYYKSGVFNGP-CGTS---LNHAVTAIGYG-QDSIIY---PKKWGAKWGEAGYIRMARDVSSSSGICGIAIDPLYPTL 210          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22
Identity = 64/173 (36.99%), Postives = 90/173 (52.02%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS--VNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+Q    QGC GG P         + GL  E  +PYTG D  CK   +       +   V    G  +E    + LV   P++VAFEV D F  YK G+Y      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG++GYF++  G + C I + A
Sbjct:  284 SPQEVVSCSQYA--QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 454          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 66/175 (37.71%), Postives = 92/175 (52.57%), Query Frame = -1
Query:  303 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITL---GAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 803
            SEQ+LVDC +   + GC GG P  A EY+  NG +     YPY  K G C+  ++ VG  ++ +  +       E  L +A+   +PVSV  E     F+ YK G++  P CG     V+HAV AVGYG   G  Y LIKNSWG  WG+ GY +++        +CG+   + YP
Sbjct:  181 SEQELVDCER--RSHGCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 345          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 64/173 (36.99%), Postives = 89/173 (51.45%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS--VNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+Q    QGC GG P         + GL  E  +PYTG D  CK   +       +   V    G  +E    + LV   P++VAFEV D F  YK G+Y      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  284 SPQEVVSCSQYA--QGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 67/178 (37.64%), Postives = 92/178 (51.69%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK-------FSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+Q    QGC GG P         + GL  E  +PY G D  CK       +SSE   V          GA +E    + LVR  P++VAFEV D F  Y+ G+Y      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  257 SPQEIVSCSQYA--QGCEGGFPYLIAGKYAQDFGLVEEACFPYAGSDSPCKPNDCFRYYSSEYYYVGGF------YGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIA 426          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.832e-22
Identity = 66/179 (36.87%), Postives = 94/179 (52.51%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK--------FSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+Q    QGC GG P         + GL  E+ +PYTG D  C+        +SSE         V    G  +E    + LV   P++VAFEV D F  Y+ GVY      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG +WG++GYF++  G + C I + A
Sbjct:  284 SPQEVVSCSQYA--QGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGCFRYYSSE------YHYVGGFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHHTGLRDPFNPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGTDECAIESIA 454          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 64/173 (36.99%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNIT--LGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+     QGC+GG P         + G+  E  +PYT KD  CK     +     D   +    G  +E    + LV+  P++VAFEV D F  Y SG+Y      +   P ++ NHAV+ VGYG +   G+ YW+IKNSWG NWG+ GYF++  G + C I + A
Sbjct:  283 SPQEVVSCSPYA--QGCDGGFPYLIAGKYAQDFGVVEESCFPYTAKDSPCKPRENCLRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIA 453          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 63/173 (36.42%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS--VNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+Q    QGC GG P         + GL  E  +PYTG D  CK   +       +   V    G  +E    + LV   P++VAFEV D F  Y++G+Y      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG +WG+ GYF++  G + C I + A
Sbjct:  284 SSQEVVSCSQYA--QGCEGGFPYLTAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAVAFEVYDDFLHYQNGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  303 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSE-NVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 803
            SEQ+LVDC +  ++ GC GG  + + +Y+  N G+ T + YPY  K   C+ + +    V++     +    E     A+   +P+SV  E     F+ YKSGV+  P CG     ++HAV AVGYG  DG  Y +IKNSWG NWG+ GY +++      +  CG+   + YP
Sbjct:  183 SEQELVDCDK--HSYGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP-CGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 347          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CPR2_ARATH1.578e-2235.90Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
BROM2_ANACO2.692e-2235.26Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATC_HUMAN4.591e-2236.99Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
PAPA3_CARPA7.832e-2237.71Caricain OS=Carica papaya PE=1 SV=2[more]
CATC_PONAB7.832e-2236.99Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_CANFA7.832e-2237.64Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
CATC_BOVIN7.832e-2236.87Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_MOUSE1.336e-2136.99Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATC_MACFA1.336e-2136.42Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
PAPA2_CARPA1.745e-2135.84Chymopapain OS=Carica papaya PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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