CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 65/173 (37.57%), Postives = 89/173 (51.45%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKD-GVCKFSSENVGVQVLDSVNIT--LGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVY-----SSPKCGNTPMDV-NHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            S Q +VDC+    ++GCNGG P         + GL  +   PYTG+D G C  S         D   I    GA +E    + L+   P  V FEV + F+FYK G+Y      +      P ++ NHAV+ VGYGV+   G PYW +KNSWG  WG+ GYF++  G + CG+
Sbjct:  273 SPQTVVDCSPY--SEGCNGGFPFLIAGKYGEDFGLPQKIVIPYTGEDTGKCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGV 443          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 63/174 (36.21%), Postives = 95/174 (54.60%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGL-VRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 803
            SEQ+L+DC +   + GC GG  + + +Y+  NGG+ TE+ YPY  K G C+ + E  G +V  +    + A DE+    G+  +PVSV  E     F+ YK G+++ P CG      +HAV A+GYG        L KNSWG NWG+ GY K++      +  CG+   + +P+
Sbjct:   49 SEQELLDCDR--RSHGCKGGYQTGSIQYVADNGGVHTEKEYPYEKKQGKCR-AKEKKGTKVQITGYKRVPANDEISLIQGIGNQPVSVLHESKGRAFQLYKGGIFNGP-CG---YKNDHAVTAIGYGKAQ----LLDKNSWGPNWGEKGYIKIKRASGKSEGTCGVYKSSYFPI 211          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.076e-21
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = -1
Query:  282 SEQQLVDCAQAFNNQGCNGGLPSQAFEYI-KYNGG-LDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA*SAP 803
            SEQ LV C     + GCNGGL   AF +I   NGG + TE +YPY   +G    C+ +   +G  + D V++    ED +   +    P+++A +  + F  Y  G+ +S  C +  +D  H V+ VGY      PYW+IKNSW   WG+ GY ++E G N C +    S  VV    P
Sbjct:  174 SEQMLVSCDTI--DSGCNGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD-EDAIAAYLAENGPLAIAVDA-ESFMDYNGGILTS--CTSKQLD--HGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVVGGPTP 344          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.297e-20
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = -1
Query:  294 SEQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 803
            SEQ LV C     ++GCNGGL  QA  +I   +NG + TE +YPYT   G    C    E VG ++   +++    E+ +   V    PV+VA +    ++ Y  GV S   C      +NH V+ VG+      PYW++KNSWG +WG+ GY ++ MG N C +    +YPV A
Sbjct:  177 SEQMLVSCDNI--DEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGE-VGAKITGFLSLPHD-EERIAEWVEKRGPVAVAVDATT-WQLYFGGVVSL--C--LAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRLAMGSNQCML---KNYPVSA 339          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.297e-20
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = -1
Query:  294 SEQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 803
            SEQ LV C     ++GCNGGL  QA  +I   +NG + TE +YPYT   G    C    E VG ++   +++    E+ +   V    PV+VA +    ++ Y  GV S   C      +NH V+ VG+      PYW++KNSWG +WG+ GY ++ MG N C +    +YPV A
Sbjct:  177 SEQMLVSCDNI--DEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGE-VGAKITGFLSLPHD-EERIAEWVEKRGPVAVAVDATT-WQLYFGGVVSL--C--LAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRLAMGSNQCML---KNYPVSA 339          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.330e-20
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 803
            SEQ+L+DC +   + GCNGG P  A + +   G +     YPY G    C+      ++++  GV+ +   N     E  L +++   +PVSV  E     F+ Y+ G++  P CGN    V+HAV AVGYG      Y LIKNSWG  WG++GY +++ G      +CG+ T + YPV
Sbjct:  182 SEQELLDCDR--RSYGCNGGYPWSALQLVAQYG-IHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN-----EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 343          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 7.330e-20
Identity = 64/179 (35.75%), Postives = 91/179 (50.84%), Query Frame = -1
Query:  312 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK--------FSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 803
            S Q++V C+     QGC+GG P         + G+  E  +PYT  D  CK        +SSE   V          G  +E    + LV+  P++VAFEV D F  Y SG+Y      +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  283 SPQEVVSCSPYA--QGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGF------YGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 453          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = -1
Query:  321 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNG-GLDTEEAYPYTGKDGVCK-FSSENVGVQVLD-SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIA 803
            S QQ++DC+  FNN GC GG P  A  ++      L  +  YP+   +G C+ F     GV V D S     G EDE+  A+    P+ V  + +  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA
Sbjct:  147 SVQQVIDCS--FNNSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAMS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDRTGNTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGIA 304          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = -1
Query:  309 SEQQLVDCAQAFNNQGCNGGLPSQAFEYI-KYNGGLDTEEAYPYTGKDGVCK-FSSENVGVQVLD-SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 803
            S QQ++DC+  +NN GCNGG    A  ++ K    L  +  YP+  ++G+C  FS  + G  +   S       EDE+  A+    P+ V  + V  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA   S
Sbjct:  156 SVQQVIDCS--YNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVS 317          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 63/176 (35.80%), Postives = 89/176 (50.57%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVG---VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 803
            SEQ+LVDC +   + GCN G  S + +Y+  NG +     YPY  K   C+  +  VG   V+      +    E  L +A+   +PVSV  E     F+ YK G++    CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  181 SEQELVDCDK--QSYGCNRGYQSTSLQYVAQNG-IHLRAKYPYIAKQQTCR--ANQVGGPKVKTNGVGRVQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIFEG-SCGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CATC_SCHMA2.279e-2137.57Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
MEX2_JACME3.887e-2136.21Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CYSP_TRYBB5.076e-2135.20Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
LMCPA_LEIME4.297e-2036.57Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI4.297e-2036.57Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
PAPA1_CARPA7.330e-2035.75Papain OS=Carica papaya PE=1 SV=1[more]
CATC_RAT7.330e-2035.75Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATO_MOUSE1.633e-1935.37Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATO_HUMAN2.785e-1933.93Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
PAPA4_CARPA3.638e-1935.80Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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