CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKF-SSENVGVQVL-----DSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 803
            SEQ+LVDCA   +  GC+G    +  EYI+ NG ++ E +YPY  ++  C+  +S++ G+          V     A  +   A+ ++    +  + +  F+ Y          G  P    HAV  VGYG   G  YW+++NSW   WGD GY   + G N+  I     YP V
Sbjct:  157 SEQELVDCA---SQHGCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVI----IGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMI---EQYPYV 318          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = -1
Query:  324 GCNGGLPSQAFEYIKYNG-------------------------GLDTEEAYPYTGKDG---VCKFSSENVGVQV-----LDSVNITLGAE-DELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVN-HAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 758
            GC GG P  A++Y+  +G                         G  T  + P  G D    V K +++N  V         S    +G +  ++Q  +    PV  AF V + F  YK+GVY       T  ++  HA+  +G+G ++G PYWL+ NSW  NWG++GYF++  G N CGI
Sbjct:  149 GCEGGYPINAWKYLVKSGFCTGGSYEAQFGCKPYSLAPCGETVGNVTWPSCPDDGYDTPACVNKCTNKNYNVAYTADKHFGSTAYAVGKKVSQIQAEIIAHGPVEAAFTVYEDFYQYKTGVYVH----TTGQELGGHAIRILGWGTDNGTPYWLVANSWNVNWGENGYFRIIRGTNECGI 324          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 63/195 (32.31%), Postives = 84/195 (43.08%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIK----YNGGLDTEE----AY--------------PYTGKDGVCKFSSENVGVQVLDSVN-------ITLG---AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY---SSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            S + L+ C       GCNGG PS A+ Y       +GGL        AY              P TG+ G     S +       S          + G   +E E+   +    PV  AF V + F  YKSGVY   S  + G       HA+  +G+GVE+G PYWL  NSW  +WG  G+FK+  G++ CGI
Sbjct:  134 SAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGG------HAIRILGWGVENGTPYWLAANSWNTDWGITGFFKILRGEDHCGI 322          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 55/188 (29.26%), Postives = 85/188 (45.21%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPY------------------TGKDGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY-----SSPKCGNTPMDVNHAVVAVGYGVEDG----VPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            S QQL+ C Q    +GC GG   +A+ YI+  G +  +  YPY                  T + G+ C   S++     +         E+++Q  +    PV   F V + F  Y  GVY     ++ K  ++  +  H+V  +G+GV+      + YWL  NSWG  WG+ GYFK+  G+N C I
Sbjct:  236 SSQQLLSCNQ-HRQKGCEGGYLDRAWWYIRKLGVVG-DHCYPYVSGQSREPGHCLIPKRDYTNRQGLRCPSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEI 421          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.025e-13
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  324 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 590
            E E+   +    PV  AF V   F  YKSGVY         +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHV---TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = -1
Query:  360 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRP---VSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGY 803
            +EQ+LVDCA   +  GC+G    +  EYI+ NG +  E  YPY  ++  C + +++  G++  +   I+    ++++ A+        V +  + ++ FR Y          G  P    HAV  VGYG   GV YW+++NSW   WGD+GY
Sbjct:  157 AEQELVDCA---SQNGCHGDTIPRGIEYIQQNGVVQ-EHYYPYVAREQSCHRPNAQRYGLK--NYCQISPPDSNKIRQALTQTHTAVAVIIGIKDLNAFRHYDGRTIMQHDNGYQPN--YHAVNIVGYGNTQGVDYWIVRNSWDTTWGDNGY 300          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 54/193 (27.98%), Postives = 82/193 (42.49%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEY-----IKYNGGLDTE---EAYPYTGKDGVCKFSSENVGVQVL-------------------------DSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            S   L+ C +   + GC GG P  A++Y     I   G  +     + YP+   +   K      G ++                          +S N+    E  +Q  + +  PV  AF+V + F  YKSG+Y         +   HA+  +G+GVE   PYWLI NSW E+WG+ G F+M  G++ C I
Sbjct:  144 SALDLISCCKDCGD-GCQGGFPGVAWDYWVKRGIVTGGSKENHTGCQPYPFPKCEHHTKGKYPACGTKIYKTPQCKQTCQKGYKTPYEQDKHYGDESYNVQ-NNEKVIQRDIMMYGPVEAAFDVYEDFLNYKSGIYRHV---TGSIVGGHAIRIIGWGVEKRTPYWLIANSWNEDWGEKGLFRMVRGRDECSI 331          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 55/190 (28.95%), Postives = 84/190 (44.21%), Query Frame = -1
Query:  327 SEQQLVDCAQAFNNQGCNGGLPSQAFEY-----IKYNGGLDTE-EAYPYT----GKDGVCKFSSENVGVQVLDSVN--ITLGAED------------ELQHAVGLVR-------PVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCG 803
            S Q +V C   +   GC GG P  AF +     +   G  +T+    PY     G  G   +  E VG+           LG               +L+++V  ++       PV   + V + F  Y+SG+Y       T +   HAV  +G+G E G PYW++ NSW ++WG++G+F+M  G N CG
Sbjct:  145 SAQDVVSCC-TWCGDGCEGGWPISAFRFHADEGVVTGGDYNTKGSCRPYEIHPCGHHGNETYYGECVGMADTPRCKRRCLLGYPKSYPSDRYYKKAYQLKNSVKAIQKDIMKNGPVVATYTVYEDFAHYRSGIYKHKAGRKTGL---HAVKVIGWGEEKGTPYWIVANSWHDDWGENGFFRMHRGSNDCG 330          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.983e-13
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = -1
Query:  324 PVSVAFEVVDGFRFYKSGVY--SSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 554
            P+ +AFEV + F  Y  GVY  +  K G       HAV  +G+G++DG+PYW + NSW  +WG+ G+F++  G + CGI
Sbjct:  275 PLEIAFEVYEDFLNYDGGVYVHTGGKLGG-----GHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILRGVDECGI 348          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.983e-13
Identity = 47/164 (28.66%), Postives = 76/164 (46.34%), Query Frame = -1
Query:  351 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFS-----SENVGVQVLDSVNI-------TLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM 803
            S Q ++DC  A +   C GG     +EY  +  G+  E    Y  KD  C KF+     +E     V+ +  +       +L   +++   +    P+S      +    Y  G+YS     N    +NH V   G+GV DG+ YW+++NSWGE WG+HG+ ++
Sbjct:  120 SVQHVIDCGDAGS---CEGGNDLPVWEYA-HRHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLSGREKMMAEIYTNGPISCGIMATEKMSNYTGGIYSEY---NDQAFINHIVSVAGWGVSDGMEYWIVRNSWGEPWGEHGWMRI 276          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
PEPT1_DERFA7.850e-1430.86Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CPR4_CAEEL7.850e-1430.56Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CATB_CHICK7.850e-1432.31Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
YCF2E_CAEEL1.025e-1329.26Uncharacterized peptidase C1-like protein F26E4.3 ... [more]
CATB_PIG1.025e-1342.70Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
PEPT1_EURMA1.749e-1331.58Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CYSP_SCHJA1.749e-1327.98Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CYSP1_OSTOS1.749e-1328.95Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]
CPR6_CAEEL2.983e-1341.77Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CATZ_BOVIN2.983e-1328.66Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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