CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.051e-39
Identity = 87/175 (49.71%), Postives = 106/175 (60.57%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC+ A  NQGCNGGL   AF+YIK NGGLD+EE+YPY  KDG CK+ +E         V+I    E  L  AV  V P+SVA +      +FY SG+Y  P C +  +D  H V+ VGYG E    +   YWL+KNSWG  WG  GY K+   + N CG+AT ASYPVV
Sbjct:  162 SEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIP-QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLD--HGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAASYPVV 333          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.208e-39
Identity = 85/175 (48.57%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 803
            SEQ L+DC  +     C+GG    AF+Y+K NGGL TEE+YPY G    C++ +EN    V D V I  G E+ L  AV  V P+SVA +   D F+FY SG+Y  P+C    + +NHAV+ VGYG E    DG  YWL+KNSWGE WG  GY K+     N CGIAT A+YP+V
Sbjct:  162 SEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIKIAKDWNNHCGIATLATYPIV 333          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.571e-38
Identity = 85/175 (48.57%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC+    NQGCNGGL   AF+YIK NGGLD+EE+YPY  KDG CK+ +E         V+I    E  L  AV  V P+SVA +      +FY SG+Y  P C +   D++H V+ VGYG E    +   YWL+KNSWG+ WG  GY K+   + N CG+AT ASYP+V
Sbjct:  162 SEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDIP-QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSS--KDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAASYPIV 333          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.051e-38
Identity = 78/171 (45.61%), Postives = 109/171 (63.74%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENV-GVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPV 803
            SEQQLVDCA    +QGC GG  S AF+Y+   G L TE  YPY  ++G+C+  +    GV +   VN+T G+E  LQ+A+    PV++A +  VD FR+Y SGVY++P C N   D++H V+A+GYG   G  Y+L+KNSW  NWG  GY  M     N+CG+++ A+YP+
Sbjct:  357 SEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYMARNDNNLCGVSSQATYPI 527          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.679e-38
Identity = 83/172 (48.26%), Postives = 103/172 (59.88%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVDC+ ++ NQGCNGG P QA++YI  N G+DTE +YPY   D  C++ + N+G  V   V    G E  LQHAV    PVSV  +     F  Y  GVY  P C +     NHAV AVGYG + +G  YW++KNSWG  WG+ GY KM   + N C IAT + YPVV
Sbjct:  154 SEQNLVDCSSSYGNQGCNGGWPYQAYQYIIANRGIDTESSYPYKAIDDNCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDS--WYANHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAIATYSVYPVV 323          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.499e-38
Identity = 84/173 (48.55%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  303 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYG----VEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYP 803
            S Q L+DC++   N+GC  G   QAFEY+  N GL+ E  YPY GKDG C++ SEN    + D VN+    E  L  AV  + PVS A +   D FRFY  G+Y  P C +    VNHAV+ VGYG    V+DG  YWLIKNSWGE WG +GY ++     N CGIA+ ASYP
Sbjct:  162 SVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSS--YFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASYP 331          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.737e-37
Identity = 79/171 (46.20%), Postives = 113/171 (66.08%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGK-DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPV 803
            SEQ ++DC+ +F N+GCNGGL + AFEYI  N GL++EE YPY  K +  CKF   +V  ++     I  G E++LQ+A+ L+ PVSVA +   + F+ Y +GVY  P C +   D++H V+AVG G ++G  Y+++KNSWG +WG +GY  M   K N CGI+T ASYP+
Sbjct:  169 SEQNILDCSSSFGNEGCNGGLMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNAL-LLNPVSVAIDASHNSFQLYTAGVYYEPACSSE--DLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPI 336          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.869e-37
Identity = 84/175 (48.00%), Postives = 103/175 (58.86%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 803
            SEQ LVDC+    N+GCNGGL   AF+Y+  NGGLD+EE+YPY   +  CK++ E         V+I    E  L  AV  V P+SVA +   + F FYK G+Y  P C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  162 SEQNLVDCSGPQGNEGCNGGLMDYAFQYVADNGGLDSEESYPYEATEESCKYNPEYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNSKYWLVKNSWGEEWGMGGYIKMAKDRRNHCGIASAASYPTV 333          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.053e-37
Identity = 83/172 (48.26%), Postives = 104/172 (60.47%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            SEQ LVD ++   NQGCNGGL   AF+YIK NGGLD+EE+YPY   D  C +  E    +    V+I    E  L  AV  V P+SVA +     F+FYKSG+Y  P C +   D++H V+ VGYG E     +W++KNSWG  WG+ GY KM   + N CGIAT ASYP V
Sbjct:   49 SEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATDTSCNYKPEYSAAKDTGFVDIP-QREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSS--KDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKDQNNHCGIATAASYPTV 217          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.619e-37
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = -1
Query:  297 SEQQLVDCA--QAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM-EMGKNMCGIATCASYPVV 803
            S Q LVDC+  + + N+GC GG  ++AF+YI  NGG++ + +YPY   D  C ++S+N        + +  G ED L+ AV    PVSV  +     F FYKSGVY  P C     +VNH V+ VGYG  DG  YWL+KNSWG N+GD GY +M    KN CGIA+  SYP +
Sbjct:  171 SAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADASYPYKATDEKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTG---NVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCSYPEI 340          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CATL1_MOUSE7.051e-3949.71Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
TEST2_MOUSE9.208e-3948.57Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATL1_RAT1.571e-3848.57Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CFAD_DICDI2.051e-3845.61Counting factor associated protein D OS=Dictyostel... [more]
CRUST_PANBO2.679e-3848.26Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATJ_MOUSE3.499e-3848.55Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP3_DICDI1.737e-3746.20Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL1_CERAE3.869e-3748.00Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL1_SHEEP5.053e-3748.26Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATS_MOUSE8.619e-3745.09Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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