CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.621e-35
Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ+LVDC +++N QGCNGGL   AF++I  NGGL+TE+ YPY G +G C    +N  V  +D   ++    E  L+ AV   +PVSVA +     F+ Y+SG+++  KCG    +++HAVVAVGYG E+GV YW+++NSWG  WG+ GY +ME         CGIA  ASYPV
Sbjct:  148 SEQELVDCDKSYN-QGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTNGKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSY-QPVSVAIDAGGRAFQHYQSGIFTG-KCGT---NMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVASKSGKCGIAIEASYPV 315          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.177e-35
Identity = 76/172 (44.19%), Postives = 102/172 (59.30%), Query Frame = -1
Query:  297 SEQQLVDCA-QAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            S Q LVDC+ + + N+GCNGG  + AF+YI  N G+D+E +YPY   +G C++ S+           +  G+ED L+ AV    PVSVA +     F  Y+SGVY  P C     +VNH V+ VGYG  +G  YWL+KNSWG N+GD GY +M     N CGIA+  SYP +
Sbjct:  163 SAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSGNHCGIASYPSYPEI 331          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.177e-35
Identity = 77/175 (44.00%), Postives = 104/175 (59.43%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            S Q L+DC++   N+GC  G    AF+Y+ +NGGL+ E  YPY  K+GVC+++ +N   ++   V +   +ED L  AV    P++    V+   FRFY+ GVY  PKC +    VNHAV+ VGYG E    DG  YWLIKNSWG+ WG  GY K+   + N C IA+ A YP V
Sbjct:  173 SVQNLIDCSKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKEGVCRYNPKNSSAKITGFV-VLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSY---VNHAVLVVGYGFEGNETDGNNYWLIKNSWGKRWGLRGYMKIAKDRNNHCAIASLAQYPTV 343          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.797e-34
Identity = 74/175 (42.29%), Postives = 104/175 (59.43%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            S Q LVDC++   N GC GG    AF+Y+ +NGGL++E  YPY GKDG C+++ +N   ++   V++   +ED L  AV  + P++   +   + F+ YK G+Y  P C +    V H V+ VGYG +    DG  YWLIKNSWG+ WG  GY K+   K N CGIA+ A YP +
Sbjct:  163 SVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKDGPCRYNPKNSKAEITGFVSLP-QSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSD--TVTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIASYAHYPTI 334          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.347e-34
Identity = 73/169 (43.20%), Postives = 101/169 (59.76%), Query Frame = -1
Query:  303 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 803
            S Q LVDC     N GC GG  + AF+Y++ NGG+D+E+AYPY G+D  C +++     +      I +G E  L+ AV  V P+SV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  +W+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  163 SPQNLVDCVT--ENYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFP 327          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.004e-34
Identity = 81/175 (46.29%), Postives = 110/175 (62.86%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-----KNMCGIATCASYPV 803
            SEQ+LVDC +++N QGCNGGL   AF++I  NGGL+TE+ YPY G  G C    +N  V  +D   ++    E  L+ A+   +PVSVA E     F+ Y+SG+++   CG    +++HAVVAVGYG E+GV YW+++NSWG  WG+ GY +ME          CGIA  ASYPV
Sbjct:  193 SEQELVDCDKSYN-QGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISY-QPVSVAIEAGGRIFQHYQSGIFTG-SCGT---NLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPV 361          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.004e-34
Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            S Q LVDC++ + N+GCNGG  ++AF+YI  N G+D+E +YPY   D  C++ S+           +  G ED L+ AV    PV V  +     F  Y+SGVY  P C      VNH V+ +GYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  163 SAQNLVDCSEKYGNKGCNGGFMTEAFQYIIDNKGIDSEASYPYKATDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPAC---TQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKGNHCGIASYPSYPEI 330          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.829e-34
Identity = 78/175 (44.57%), Postives = 103/175 (58.86%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSEN-VGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ+LVDC +   NQGCNGGL   AFE+IK  GG+ TE  YPY  ++G C  S  N + V +    N+    ED L  AV   +PVSVA +     F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+HGY +M+      + +CGIA   SYP+
Sbjct:  176 SEQELVDCDKE-ENQGCNGGLMESAFEFIKQKGGITTESNYPYKAQEGTCDASKVNDLAVSIDGHENVPANDEDALLKAVA-NQPVSVAIDAGGSDFQFYSEGVFT----GDCSTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPSYPI 344          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.919e-34
Identity = 76/174 (43.68%), Postives = 108/174 (62.07%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPV 803
            SEQ+LVDC  ++N +GCNGGL   AFE+I  NGG+DT++ YPY G DG C    +N  V  +DS  ++   +E+ L+ AV   +P+S+A E     F+ Y SG++    CG     ++H VVAVGYG E+G  YW+++NSWG++WG+ GY +M          CGIA   SYP+
Sbjct:  185 SEQELVDCDTSYN-EGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAH-QPISIAIEAGGRAFQLYDSGIFDG-SCGT---QLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYPI 352          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.165e-33
Identity = 78/175 (44.57%), Postives = 105/175 (60.00%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSEN-VGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ+LVDC +   NQGCNGGL   AFE+IK  GG+ TE  YPYT ++G C  S  N + V +    N+ +  E+ L  AV   +PVSVA +     F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+ GY +M+      + +CGIA  ASYP+
Sbjct:  176 SEQELVDCDKE-ENQGCNGGLMESAFEFIKQKGGITTESNYPYTAQEGTCDESKVNDLAVSIDGHENVPVNDENALLKAVA-NQPVSVAIDAGGSDFQFYSEGVFT----GDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPI 344          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CYSP4_BRANA3.621e-3547.13Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CATS_CANFA6.177e-3544.19Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATQ_RAT6.177e-3544.00Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATR_MOUSE1.797e-3442.29Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATK_MOUSE2.347e-3443.20Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
GCP1_ARATH4.004e-3446.29Germination-specific cysteine protease 1 OS=Arabid... [more]
CATS_SAIBB4.004e-3442.69Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CYSEP_PHAVU6.829e-3444.57Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]
RD21A_ARATH8.919e-3443.68Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSEP_VIGMU1.165e-3344.57Vignain OS=Vigna mungo PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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