CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:727..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.426e-33
Identity = 81/175 (46.29%), Postives = 101/175 (57.71%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS-VNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ+LVDC     NQGCNGGL   AFE+IK  GG+ TE  YPY   DG C  S EN     +D   N+    E+ L  AV   +PVSVA +     F+FY  GV++   CG    +++H V  VGYG   DG  YW +KNSWG  WG+ GY +ME G    + +CGIA  ASYP+
Sbjct:  174 SEQELVDC-DTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVA-NQPVSVAIDAGGSDFQFYSEGVFTG-SCGT---ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 342          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.426e-33
Identity = 73/169 (43.20%), Postives = 96/169 (56.80%), Query Frame = -1
Query:  303 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYP 803
            S Q LV C    NN GC GG  + AFEY++ N G+D+E+AYPY G+D  C +S      +      I    E  L+ AV  + PVSV  +  +  F+FY  GVY    C   P ++NHAV+AVGYG + G  +W+IKNSWG  WG+ GY  +    K  CGIA  AS+P
Sbjct:  168 SPQNLVYCVS--NNNGCGGGYMTNAFEYVRLNRGIDSEDAYPYIGQDESCMYSPTGKAAKCRGYREIPEDNEKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDTGC--NPENINHAVLAVGYGAQKGTKHWIIKNSWGTEWGNKGYVLLARNMKQTCGIANLASFP 332          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 79/176 (44.89%), Postives = 106/176 (60.23%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE--DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ+LV+CA+   N GCNGG+   AF +I  NGGLDTEE YPYT  DG C  +  +  V  +D   ++    E  LQ AV   +PVSVA +     F+ Y SGV++  +CG    +++H VVAVGYG +   G  YW ++NSWG +WG++GY +ME         CGIA  ASYP+
Sbjct:  204 SEQELVECARNGQNSGCNGGIMDDAFAFIARNGGLDTEEDYPYTAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVA-HQPVSVAIDAGGREFQLYDSGVFTG-RCGT---NLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTARTGKCGIAMMASYPI 374          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 77/174 (44.25%), Postives = 105/174 (60.34%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQQLVDC  A  N GC GG  + AF++I  NGG+++EE YPY G+DG+C  S+ N  V  +DS  N+    E  LQ AV   +PVSV  +     F+ Y+SG+++    G+  +  NHA+  VGYG E+   +W++KNSWG+NWG+ GY + E         CGI   ASYPV
Sbjct:   51 SEQQLVDCTTA--NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICN-STVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 74/172 (43.02%), Postives = 100/172 (58.14%), Query Frame = -1
Query:  297 SEQQLVDCA-QAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 803
            S Q LVDC+ + + N+GCNGG  + AF+YI  N G+D++ +YPY   D  C++ S+           +  G ED L+ AV    PVSV  +     F  Y+SGVY  P C     +VNH V+ VGYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  163 SAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 331          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.550e-33
Identity = 83/185 (44.86%), Postives = 108/185 (58.38%), Query Frame = -1
Query:  279 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFS----SENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPVVA*SAPE 803
            SEQ+L+DC  A +N GC GGL   AFEYIK NGGL TE AYPY    G C  +    +  V V +    ++   +E++L  AV   +PVSVA E     F FY  GV++  +CG    +++H V  VGYGV EDG  YW +KNSWG +WG+ GY ++E        +CGIA  ASYPV   S P+
Sbjct:  182 SEQELIDCDTA-DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVA-NQPVSVAVEASGKAFMFYSEGVFTG-ECGT---ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSKPK 360          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.861e-33
Identity = 76/174 (43.68%), Postives = 111/174 (63.79%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPV 803
            SEQ+LVDC +++N +GC+GGL   AFE++  NGG+DTEE YPY  ++GVC    +N  V  +DS  ++ +  E  LQ AV   +PVS+A E     F+ YKSG+++  KCG     V+H VV  GYG E+G+ YW+++NSWG N  ++GY +++        +CG+A   SYPV
Sbjct:   66 SEQELVDCDRSYN-EGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVA-HQPVSIALEAGGRDFQHYKSGIFTG-KCGTA---VDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSSSGLCGLAIEPSYPV 233          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.197e-32
Identity = 78/182 (42.86%), Postives = 112/182 (61.54%), Query Frame = -1
Query:  279 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS-VNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPE 803
            SEQ+LVDC  ++N +GCNGGL   AFE+I+ NG + TE++YPY  +DG C  +  N  V  +D   ++    E+ L  AV   +P+SV+ E    GF+FY  GV++  +CG    +++H V  VGYG   DG  YW++KNSWGE WG+ GY +M+ G    +  CGIA  ASYP+   + P+
Sbjct:  178 SEQELVDCDTSYN-EGCNGGLMDYAFEFIQKNG-ITTEDSYPYAEQDGTCASNLLNSPVVSIDGHQDVPANNENALMQAVAN-QPISVSIEASGYGFQFYSEGVFTG-RCGT---ELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDKRGKCGIAMEASYPIKTSANPK 352          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.197e-32
Identity = 78/176 (44.32%), Postives = 102/176 (57.95%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKN-SWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 803
            +EQ LVDC+    N+GCNGG     F Y++ NGGLD+E +YPY GK   C+++ +         V+I    E +L  AV  V P+SVA       F+FYK G+Y  P+C   P  ++HA++ VGY  E    D   YWL+KN S G+NWG  GY KM    +N CGIAT ASYP V
Sbjct:  105 NEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPYEGKVKTCRYNPKYSAANDTGFVDIP-SQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRC--DPEGLDHAMLLVGYSYEGADSDNNKYWLVKNSSEGKNWGMDGYIKMAKDRRNNCGIATAASYPTV 277          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.747e-32
Identity = 81/184 (44.02%), Postives = 106/184 (57.61%), Query Frame = -1
Query:  282 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFS----SENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPVVA*SAP 803
            SEQ+L+DC  A +N GC GGL   AFEYIK NGGL TE AYPY    G C  +    +  V V +    ++   +E++L  AV   +PVSVA E     F FY  GV++    G+   +++H V  VGYGV EDG  YW +KNSWG +WG+ GY ++E        +CGIA  ASYPV   + P
Sbjct:  182 SEQELIDCDTA-DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVA-NQPVSVAVEASGKAFMFYSEGVFT----GDCGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYNKP 359          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CYSEP_RICCO4.426e-3346.29Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CATK_CHICK4.426e-3343.20Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CYSP1_ORYSJ5.781e-3344.89Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CPGP2_ZINOF5.781e-3344.25Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATS_HUMAN5.781e-3343.02Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CYSP2_HORVU7.550e-3344.86Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSPL_SOLLC9.861e-3343.68Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP_HEMSP2.197e-3242.86Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATL6_HUMAN2.197e-3244.32Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CYSP1_HORVU3.747e-3244.02Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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