CB293540

Overview
NameCB293540
Unique NameCB293540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:727..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 74/181 (40.88%), Postives = 101/181 (55.80%), Query Frame = -1
Query:  309 SEQQLVDCAQAFN-------NQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 803
            SEQQLVDC    +       + GCNGGL + AFEY+  +GG+  E+ Y YTG+DG CKF    V   V +   +TL   DE Q A  LV+  P++VA       + Y SGV     C  + +D  H V+ VG+G     P       YW+IKNSWG+NWG+ GY+K+  G+N+CG+ +  S
Sbjct:  180 SEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRDGSCKFDKSKVVASVSNFSVVTL---DEDQIAANLVKNGPLAVAINAA-WMQTYMSGVSCPYVCAKSRLD--HGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVS 354          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            SEQQL+DC   F + GC+GGL   A+E +   GG+  E  YPY   +G C+ ++    V+V       L  E++L+  + +V P+ VA +  D    YK GV     C N  +  NHAV+ VGY VE+GVP+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  161 SEQQLIDCD--FVDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVN-YKRGVIRY--CANHGL--NHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNINACGI 313          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 67/168 (39.88%), Postives = 94/168 (55.95%), Query Frame = -1
Query:  303 QQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAV--GLVRPVSVAFEVVDG-FRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 797
            ++ + C +   N GCNGGL S  ++YI    G+  E  YPYTG D  CK + ++   ++     +    E EL+ A+  GL+    V+ +V    F+ YKSG Y+  KC N    +NH V AVGYGV DG   W+++NSWG +WGD GY  M +  N CG+AT   YP
Sbjct:  142 EEHMQCTRDNGNNGCNGGLGSNVYDYI-IEHGVAKESDYPYTGSDSTCKTNVKSFR-KITGYTKVPRNNEAELKAALSQGLL---DVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVATDPLYP 304          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.599e-28
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            SEQQ++DC   F + GCNGGL   AFE I   GG+  E  YPY   +  C+ +S    VQV D        E++L+  + LV P+ +A +  D    YK G+     C N+ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  160 SEQQMIDCD--FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN-YKQGIIKY--CFNSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNINACGM 312          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 64/160 (40.00%), Postives = 93/160 (58.13%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            SEQQ++DC   F + GCNGGL   AFE I   GG+  E  YPY   +  C+ ++    VQV D        E++L+  + LV P+ +A +  D    YK G+     C N+ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  160 SEQQMIDCD--FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNTNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN-YKQGIIKY--CFNSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEEGFFRVQQNINACGM 312          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            SEQQ++DC   F + GCNGGL   AFE I   GG+  E  YPY   +  C+ +S    VQV D     +  E++L+  + LV P+ +A +  D    YK G+     C ++ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  160 SEQQMIDCD--FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVN-YKQGIIKY--CFDSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNINACGM 312          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.551e-28
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = -1
Query:  324 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 803
            SEQQL+DC   F + GC+GGL   A+E +   GG+  E  YPY   +G C+ ++    V+V          E++L+  + +V P+ VA +  D    YK G+     C N  +  NHAV+ VGYGVE+G+P+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  161 SEQQLIDCD--FVDVGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGPCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASD-IVGYKRGIIRY--CENHGL--NHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.629e-27
Identity = 75/175 (42.86%), Postives = 101/175 (57.71%), Query Frame = -1
Query:  297 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSP---KCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 803
            SEQQLVDC     + GCNGGLPS A+E I   GGL  E+ YPY  K+  C   ++ V V +  SVN+T   +DE + A  L     +SV    +   +FY+ G+ S P    C    +D  HAV+ VGYGV E   P+W++KNSWG  WG++GYF+M  G   CGI T A+  ++
Sbjct:  153 SEQQLVDCDGL--DDGCNGGLPSNAYESIIKMGGLMLEDNYPYDAKNEKCHLKTDGVAVYINSSVNLT---QDETELAAWLYHNSTISVGMNAL-LLQFYQHGI-SHPWWIFCSKYLLD--HAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATSAMI 318          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 69/174 (39.66%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  300 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC--KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 803
            SEQ L++C +   N GC GG    A+E+I  NGGL T+  YPY   +GVC  +   +N  V +    N+    E  L  AV      +V       F+ Y+SGV+    CG    ++NH VV VGYG E+G  YW++KNS G+ WG+ GY KM       + +CGIA  ASYP+
Sbjct:  192 SEQDLINCNK--ENNGCGGGKVETAYEFIMNNGGLGTDNDYPYKALNGVCEGRLKEDNKNVMIDGYENLPANDEAALMKAVAHQPVTAVVDSSSREFQLYESGVFDGT-CGT---NLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANPRGLCGIAMRASYPL 359          
BLAST of CB293540 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.128e-27
Identity = 65/176 (36.93%), Postives = 97/176 (55.11%), Query Frame = -1
Query:  294 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSPKCGNTPMDVNHAVVAVGYGVED------GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 803
            SEQ+L+DC     +  CNGGL   A++ IK  GGL+ E  YPY  K   C F+     VQV   V++  G E  +Q  +    P+S+     +  +FY+ GV    K   +  +++H V+ VGYGV D       +PYW++KNSWG  WG+ GY+++  G N CG++  A+  V+A
Sbjct:  442 SEQELLDCDTT--DSACNGGLMDNAYKAIKDIGGLEYEAEYPYKAKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINA-NAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
The following BLAST results are available for this feature:
BLAST of CB293540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
CYSP_PEA2.513e-2840.88Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CATV_NPVCD2.513e-2840.63Viral cathepsin OS=Choristoneura fumiferana defect... [more]
ACP2_ENTHI4.287e-2839.88Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CATV_NPVAC5.599e-2840.63Viral cathepsin OS=Autographa californica nuclear ... [more]
CATV_NPVRO9.551e-2840.00Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATV_NPVBM9.551e-2840.00Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATV_NPVAP9.551e-2839.38Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATL_SCHMA1.629e-2742.86Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CPR4_ARATH2.128e-2739.66Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CPR1_DROME2.128e-2736.93Putative cysteine proteinase CG12163 OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293540 ID=CB293540; Name=CB293540; organism=Citrus sinensis; type=EST; length=803bp
CCCCTGAGTTTTTTTTTTTTTTTTATAACACTACCTTGCATTGACAAAAT
ATCCATAACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACA
TAGATCTCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGT
AAATTATATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACC
ATTCTGCTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGA
CTTGCTGATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACA
ACTGGGTATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTC
CATCTTAAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAA
TCAGCCAATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACG
GCATGGTTCACATCCATGGGAGTATTTCCACATTTAGGGCTGCTGTAAAC
TCCACTCTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCA
CAGGTCGAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAG
GTAATGTTGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAA
TTTGCAGACACCATCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAA
GGCCACCATTGTACTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCA
TTGCATCCCTGGTTGTTGAAAGCTTGGGCACAGTCTACAAGCTGCTGTTC
TGA
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