CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 67/179 (37.43%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  ++ K Y S  E   RF  F  NL+ I + N    + +  +NKFAD S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LS+QQL+DC   F + GC+GGL   AFE +   GG+  E  YPY
Sbjct:   28 FEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDC--DFVDAGCDGGLLHTAFEAVMNMGGIQAESDYPY 201          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 66/178 (37.08%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   + K Y S  E   RF  F  NL+ I + N    S +  +NKF+D S +E      G +     QN       N     D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LS+QQL+DC   F + GC+GGL   A+E +   GG+  E  YPY
Sbjct:   28 FEDFLHNFNKNYSSKSEKLHRFKIFQHNLEEIINKNLNDTSAQYEINKFSDLSKDETISKYTGLSLPLQNQNFCEVVVLNRP--PDKGPLEFDWRRLNKVTSVKNQGTCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC--DFVDMGCDGGLLHTAYEAVMNMGGIQAENDYPY 201          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  218 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-GLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +YGK Y S+EE   + A +  N+  I+  N + GL    + + +N F D + EEF++  +          K   K  +  LP+  +W++ G V+PV+ QG C SCW FS TG++E    +  G+ I LS Q LVDC++   N GC  G    A  Y+  +GGL++E  YPY
Sbjct:   35 KYGKAY-SLEEEGQKRAVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYLGNTYLALHYVMENGGLESEATYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 68/215 (31.63%), Postives = 109/215 (50.70%), Query Frame = 2
Query:  152 ETSVLQVIG---QARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRH----------------------RLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGI-SLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            E SV Q+ G     ++A  F  F  +Y + Y+ + E   ++  F  N   I+  N     Y++ +N+F+D+S ++F+ +                        G  +N   ++ G + L ADV PE  D+RE GIV   KDQG CGSCW F++ G++E  Y +   K I +LS+Q++VDC++   N GC+GG P  +F Y   + G+   + Y Y
Sbjct:  218 EVSVAQIEGLFVNLKYASKFFNFMNKYKRSYKDINEQMEKYKNFKMNYLKIKKHNETNQMYKMKVNQFSDYSKKDFESYFRKLVPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGAN-LLADV-PEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDCSKL--NFGCDGGHPFYSFIY-AIENGICMGDDYKY 427          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 66/179 (36.87%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  ++ K Y S  E   RF  F  NL+ I + N    S +  +NKF+D S +E      G +     QN C            D  P   DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LS+QQL+DC   F + GC+GGL   A+E +   GG+  E  YPY
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVVVLDR---PPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDC--DFVDVGCDGGLLHTAYEAVMNMGGIQAENDYPY 201          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 66/179 (36.87%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QN-CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  ++ K Y S  E   RF  F  NL+ I + N    + +  +NKF+D S EE      G +     QN C            D  P   DWR+   V+ VK+QG CG+CW F+T GSLE+ +   + + I+LS+QQ +DC +   N GC+GGL   AFE     GG+  E  YPY
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLSLPHQTQNFCEVVILDR---PPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDRV--NAGCDGGLLHTAFESAMEMGGVQMESDYPY 201          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 62/184 (33.70%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN---HKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +  F +++ K Y + ++    F  F +NL  + + N        G+NKF+D     F     G   N   +T  N   ++L   V         PE+ DWR+   V+ VK+QG CGSCW F+  G++E+ Y       I LS+QQL+DC +   +QGC+GGL   AF+ I   GG++ E  YPY
Sbjct:   33 YENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDRV--DQGCDGGLMHLAFQEIIRIGGVEHEIDYPY 214          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 68/178 (38.20%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  R+ K Y S  E   RF  F  NL+ I + N +  S +  +NKF+D S +E      G +      T+   K+     P  K     DWR    V+ VK+QG CG+CW F+T GSLE+ +     + I+LS+QQ++DC   F + GCNGGL   AFE I   GG+  E  YPY
Sbjct:   28 FEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLS--LPTQTQNFCKVILLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDC--DFVDAGCNGGLLHTAFEAIIKMGGVQLESDYPY 200          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 65/185 (35.14%), Postives = 82/185 (44.32%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQN------------CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   Y K Y   +    RF  F +NL+ I   N    S    +NKF+D S  E      G                C+           D LP+  DWR +  ++ VKDQG CGSCW  +  G+LE  Y       I+LS+QQL+DC  A  N  C+GGL   AFE +   GGL  E  YPY
Sbjct:   32 FETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCDSA--NMACDGGLMHTAFEQLMNAGGLMEEIDYPY 214          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 71/202 (35.15%), Postives = 99/202 (49.01%), Query Frame = 2
Query:  194 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH---------------KLT-ADVLPETKD----------WRESGIVSPVKDQG-HCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + F  F  +Y K++ S ++   RF TF KN  +++ T+     Y L LNKF+D S EEF+          + T+   H               KL  A  + E KD          W  +  VSP+KDQG HCGSCW FS+  S+E+ Y     K   LS+Q+LV+C +  ++ GC GGLP  A EYI +  G+  E   PY
Sbjct:  118 IEFDAFVEKYKKVHRSFDQRVQRFLTFRKNYHIVK-THKPTEPYSLDLNKFSDLSDEEFKALYPVITPPKTYTSLSKHLEFKKMSHKNPIYISKLKKAKGIEEIKDLSLITGENLNWARTDAVSPIKDQGDHCGSCWAFSSIASVESLYRLYKNKSYFLSEQELVNCDK--SSMGCAGGLPITALEYI-HSKGVSFESEVPY 315          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVCF8.447e-2237.43Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_NPVCD1.103e-2137.08Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATM_MOUSE1.441e-2135.67Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CYSP_PLAVS1.882e-2131.63Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CATV_NPVAP1.882e-2136.87Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATV_NPVOP3.210e-2136.87Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVST4.192e-2133.70Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATV_NPVBM5.475e-2138.20Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATV_NPVAH5.475e-2135.14Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CYSP_THEAN7.151e-2135.15Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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