CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 65/178 (36.52%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  ++ K Y S  E   RF  F  NL+ I   N    + +  +NKF+D S +E      G A     QN       N     D  P   DWR    V+ VK+QG CG+CW F+T  SLE+ +     + I+LS+QQL+DC   + + GCNGGL   A+E +   GG+  E  YPY
Sbjct:   28 FEDFLHKFNKHYSSESEKLRRFQIFQHNLEEIIIKNQNDTTAQYEINKFSDLSKDETISKYTGLALPLQTQNFCEVVVLNRP--PDKGPLEFDWRRLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDC--DYVDAGCNGGLLHTAYEAVMQMGGVQAENDYPY 201          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 66/177 (37.29%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  224 GKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-------ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI-KYDGGLDTEEAYPY 718
            GK Y+  +E   R A F  N  +    N K   GL SY   LN  AD + EEF   R G         +G  + +       ++ LP+  DWR  G V+PV++QG CGSC+ F+T  +LEA + Q  G+ + LS Q +VDC +   N GC+GG    AF+Y  +Y  G+  E  YPY
Sbjct:   99 GKHYDQ-KENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFMV-RNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQYASRY--GIAMESRYPY 271          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 64/182 (35.16%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRS--TNCKGLSYRLGLNKFADWSWEEFQRHRLG-----AAQNCSATTKGNHKLTADVLPETKDWRESGIVS--PVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +A +  +Y + Y +  +   R+  F+ NL+ IR+   + +  ++ L LN+FAD S +EF +  L       A+  +A +   +K  A+V     DW ++  V    VK+QG CGSCW FS  G+LE        +   LS+Q LVDC+  ++N GCNGG    AFEY+  D GL   + YPY
Sbjct:   26 YANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLKVPRTAKLNAANSNFQYK-GAEV-----DWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYVA-DNGLAEAKDYPY 200          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 66/181 (36.46%), Postives = 87/181 (48.07%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN---CKGLSYRLGLNKFADWSWEEFQRHRLGAA-----QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   Y K Y S  E   R++ F  NL  I + N     G +    +NKF+D S  E      G +      N   T   N     D  P   DWRE   V+ +K+QG CG+CW F+T  S+E+ +     + I LS+QQL+DC     + GCNGGL   AFE I   GG+ TE  YP+
Sbjct:   56 FESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKINKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQP--PDKGPLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCDSV--DMGCNGGLLHTAFEEIMRMGGVQTELDYPF 232          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 60/194 (30.93%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  173 IGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNC--KGLSYRLGLNKFADWSWEE----------------------FQRHRLGAAQNCSATTKG--NHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI 676
            I   ++A  F +F + + K+Y++++E   +F  F  N   I++ N   K   Y+  +N+F+D+S EE                      F+ H           T G  N K     +PE  D+RE GIV   KDQG CGSCW F++ G++E+ + +     +S S+Q++VDC++  +N GC+GG P  +F Y+
Sbjct:  216 INNIKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSK--DNFGCDGGHPFYSFLYV 407          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 67/178 (37.64%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  R+ K Y S  E   RF  F  NL+ I + N +  S +  +NKF+D S +E      G +      T+   K+     P  K     DWR    V+ VK+QG CG+CW F+T  SLE+ +     + I+LS+QQ++DC   F + GCNGGL   AFE I   GG+  E  YPY
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLS--LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDC--DFVDAGCNGGLLHTAFEAIIKMGGVQLESDYPY 200          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 64/182 (35.16%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPE---TKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYDGGLDTEEAYPY 718
            +  F +R+GK +    E   RF  F +N+      N +       ++ KFAD + +EF +  L    +  A    NHK      D  P    + DWR+ G V+PVK+QG CGSCW FS  G++E  +  +    +SLS+Q LV C     ++GCNGGL  QA  +I   ++G + TE +YPY
Sbjct:   42 YGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNP--DYYARHLKNHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNI--DEGCNGGLMDQAMNWIMQSHNGSVFTEASYPY 219          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  446 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            LPE  DWR+ G V+PVK+QG CGSCW FST  ++E+      G  ISLS+Q+LVDC +   N GC GG    A++YI  +GG+DT+  YPY
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYIINNGGIDTQANYPY 89          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 67/178 (37.64%), Postives = 90/178 (50.56%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  R+ K Y S  E   RF  F  NL+ I   N +  S +  +NKF+D S +E      G +      T+   K+     P  K     DWR    V+ VK+QG CG+CW F+T  SLE+ +     + I+LS+QQ++DC   F + GCNGGL   AFE I   GG+  E  YPY
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIIIKN-QNDSAKYEINKFSDLSKDETIAKYTGLS--LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDC--DFVDAGCNGGLLHTAFEAIIKMGGVQLESDYPY 200          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 63/182 (34.62%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPE---TKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYDGGLDTEEAYPY 718
            +  F +R+GK +    E   RF  F +N+      N +       ++ KFAD + +EF +  L    +  A    +HK      D  P    + DWR+ G V+PVK+QG CGSCW FS  G++E  +  +    +SLS+Q LV C     ++GCNGGL  QA  +I   ++G + TE +YPY
Sbjct:   42 YGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNP--DYYARHLKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNI--DEGCNGGLMDQAMNWIMQSHNGSVFTEASYPY 219          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVHC7.151e-2136.52Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATL_BRUPA1.593e-2037.29Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATL1_PARTE1.593e-2035.16Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVLD2.717e-2036.46Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CYSP_PLAFA3.549e-2030.93Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CATV_NPVAC4.635e-2037.64Viral cathepsin OS=Autographa californica nuclear ... [more]
LMCPA_LEIME6.053e-2035.16Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
ERVC_TABDI7.906e-2051.65Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATV_NPVRO1.033e-1937.64Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CYSP1_LEIPI2.300e-1934.62Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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