CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 64/179 (35.75%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNL-DLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F R+Y K Y+S  E   R+  F  NL D+I         Y++  NKF+D S +E      G +      T+   ++     P  K     DWR    ++ VK+QG CG+CW F+T  SLE+ +  A  + I+LS+QQ++DC     + GC GGL   AFE I   GG+  E  YPY
Sbjct:   28 FEEFVRQYNKQYDSEYEKLRRYKIFQHNLNDIITKNRNDTAVYKI--NKFSDLSKDETIAKYTGLS--LPLHTQNFCEVVVLDRPPGKGPLEFDWRRFNKITSVKNQGMCGACWAFATLASLESQFAIAHDRLINLSEQQMIDCDSV--DVGCEGGLLHTAFEAIISMGGVQIENDYPY 200          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  446 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            LP   DWR  G V+ +K+Q  CGSCW FS   ++E+      G+ ISLS+Q+LVDC  A  + GCNGG  + AF+YI  +GG+DT++ YPY
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA--SHGCNGGWMNNAFQYIITNGGIDTQQNYPY 89          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 62/178 (34.83%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-----DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   Y K+Y    E + RF+ F + L+ I   N    S    +NKFAD S  E      G   N    T    K      P  K     DWR+   V+ +K+Q  CG+CW F+T  S+E+ Y       I LS+QQ++DC   + + GC+GGL   AFE +   G L  E  YPY
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGL--NMPVQTTNFCKTIVIDQPPGKGPLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDC--DYVDMGCDGGLLHTAFEQMIQMGELVQEHEYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  449 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            PE+ DWR+ G V+PVK+Q  CGSCW FST  ++E       GK ISLS+Q+L+DC +   + GC GG  + + +Y+  +GG+ TE+ YPY
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDR--RSHGCKGGYQTGSIQYVADNGGVHTEKEYPY 89          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  188 HALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFG---KGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +A+ F  +A    K + +VE ++ R A F+ N   +   N KG S++L ++  FA  + EE++            T + N K+T   +  PE+ DWR  G V+P++DQ  CGSC+TF +  +LE       G     + LS++ LV C +   N GCNGGL S  ++YI    G+  E  YPY
Sbjct:    5 NAIDFNTWAANNNKHFTAVEALRRR-AIFNMNARFVAEFNKKG-SFKLSVDGPFAAMTNEEYR-----TLLKSKRTVEENGKVTYLNIQAPESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRDNGNNGCNGGLGSNVYDYI-IQNGVAKESDYPY 179          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  449 PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            PE+ DWRE G V+PVK+Q  CGSCW FST  ++E       G+ ISLS+Q+L+DC   + + GC+GG  + + +Y+  D G+ TE  YPY
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDC--EYRSHGCDGGYQTPSLQYV-VDNGVHTEREYPY 88          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 59/180 (32.78%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  191 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFG---KGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            A+ F  +A +  K + ++E+++ R A F+ N   + S N  G S++L ++  FA  + EE+   R       +    G  K      PE+ DWR+ G V+P++DQ  CGSC+TF +  +LE       G     + LS++ +V C +   N GCNGGL S  ++YI  + G+  E  YPY
Sbjct:   13 AIDFNTWASKNNKHFTAIEKLRRR-AIFNMNAKFVDSFNKIG-SFKLSVDGPFAAMTNEEY---RTLLKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQCTRDNGNNGCNGGLGSNVYDYI-IEHGVAKESDYPY 186          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 59/198 (29.80%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  185 RHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN----CKGLSYRLGLNKFADWSWEEFQ---------------RHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY-HQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            ++A  F ++ +   K YE+++E   RF  F       +  N      GL+Y   +N+++D+S EEF                ++ +   ++ + T   +    +   P+++D+R      P KDQG+CGSCW F+  G+ E  Y H      IS S+QQ+VDC+    N GC+GG P  AF Y+  + G+   + YPY
Sbjct:  157 KYASKFFKYMKENNKKYENMDEQLQRFENFKIRYMKTQKHNEMVGKNGLTYVQKVNQYSDFSKEEFDNYFKKLLSVPMDLKSKYIVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCST--ENYGCDGGNPFYAFLYM-INNGVCLGDEYPY 351          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 61/187 (32.62%), Postives = 86/187 (45.99%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLS-YRLGLNKFADWSWEEFQR----------------HRLGAAQNCSATTKGNHKLTAD-------VLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDG 688
            F  F  +Y + + + +E   R  TF  N   ++    KG   Y  G+N+F+D +  EF +                + L    N +        L  D       +  E  DWR S  V+ VKDQ +CG CW FST GS+E  Y   F K   LS Q+L+DC  +F+N GC GGL   A+EY++  G
Sbjct:  125 FEEFNSKYNRRHATQQERLNRLVTFRSNYLEVKEQ--KGDEPYVKGINRFSDLTEREFYKLFPVMKPPKATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGENLDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDC-DSFSN-GCQGGLLESAYEYVRKYG 307          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 2
Query:  188 HALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFG---KGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + + F  +     K + +VE ++ R A F+ N  ++   N K  +++L ++  FA  + EE+           S   KG  +      P+  DWR+ G V+P++DQG+CGSC+TF +  +LE       G   + + LS++ +V C +   N GCNGGL S  + YI  + G+  E  YPY
Sbjct:   12 YGIDFNTWVANNNKHFTAVESLRRR-AIFNMNARIVAENNRKE-TFKLSVDGPFAAMTNEEYNSL---LKLKRSGEEKGEVRYLNIQAPKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTREDGNNGCNGGLGSNVYNYI-MENGIAKESDYPY 186          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVEP5.125e-1935.75Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
ERVB_TABDI6.693e-1948.35Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATV_NPVBS8.741e-1934.83Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
MEX2_JACME1.491e-1846.67Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CPP3_ENTHI4.338e-1833.88Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
MEX1_JACME7.400e-1846.67Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CPP2_ENTHI9.665e-1832.78Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CYSP_PLAVN3.673e-1729.80Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CYSP_THEPA6.264e-1732.62Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CPP1_ENTHI6.264e-1730.94Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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