CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  197 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL-SYRLGLNKFADWSWEEFQR---HRLGAAQNCSATTKGNHKLTADVLPETKDWRE-SGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +F  F  +Y + Y + EE   R   F+ NL   +    + L +   G+  F+D + EEF R   HR    +      +   +   + +P T DWR+  G++S VK Q  C  CW  +  G++EA +   + + + LS Q+L+DC +     GC GG    AF  +  + GL +E+ YP+
Sbjct:   41 AFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDCGRC--GDGCRGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  197 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +F  F + + K Y +VEE ++    F ++L  + +   KG      +N  +D S +EF+   L +A+      K    L A+          +P   D R    V+P++ QG CGSCW FS   + E+AY       + LS+Q+LVDCA   +  GC+G    +  EYI+ +G ++ E +YPY
Sbjct:   25 TFEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN--KG-----AINHLSDLSLDEFKNRYLMSAE-AFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA---SQHGCHGDTIPRGIEYIQQNGVVE-ERSYPY 195          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 36/91 (39.56%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  446 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +P++ DWR+ G V+ VK+QG CG CW F+   ++E  Y    G  + LS+Q+++DCA ++   GC GG  ++A+++I  + G+ T+E YPY
Sbjct:    2 VPQSIDWRDYGAVNEVKNQGPCGGCWAFAAIATVEGIYKIRKGNLVYLSEQEVLDCAVSY---GCKGGWVNRAYDFIISNNGVTTDENYPY 89          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 58/180 (32.22%), Postives = 93/180 (51.67%), Query Frame = 2
Query:  191 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFG---KGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            A+ F  +A +  K + ++E+++ R A F+ N   + S N  G S++L ++  FA  + EE+   R       +    G  K      PE+ DWR+ G V+P++DQ  CGSC+TF +  +LE       G     + LS++ +  C +   N GCNGGL S  ++YI  + G+  E  YPY
Sbjct:    9 AIDFNTWASKNNKHFTAIEKLRRR-AIFNMNAKFVDSFNKIG-SFKLSVDGPFAAMTNEEY---RTLLKSKRTTEENGQVKYLNIQAPESVDWRKEGKVTPLRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHM-QCTRDNGNNGCNGGLGSNVYDYI-IEHGVAKESDYPY 181          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  197 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +F  F + + K Y + E+ ++    F ++L  + S   KG      +N  +D S +EF+   L  A N     K    L A+          LP   D R    V+P++ QG CGSCW FS   S E+AY       + L++Q+LVDCA   +  GC+G    +  EYI+ +G +  E  YPY
Sbjct:   25 TFEEFKKAFNKTYATPEKEEVARKNFLESLKYVESN--KG-----AINHLSDLSLDEFKNQFLMNA-NAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDCA---SQNGCHGDTIPRGIEYIQQNGVVQ-EHYYPY 195          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 51/179 (28.49%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  197 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL-SYRLGLNKFADWSWEEFQR---HRLGAAQNCSATTKGNHKLTADVLPETKDWRE-SGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +F  F  ++ + Y S EE   R   F+ NL   +    + L +   G+  F+D + EEF +   +R  A    S   +   +   + +P + DWR+ +  +SP+KDQ +C  CW  +  G++E  +  +F   + +S Q+L+DC +     GC+GG    AF  +  + GL +E+ YP+
Sbjct:   41 AFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC--GDGCHGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-GLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK-------DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F R+A +  K Y   E++  R   ++ N  +I   N +  ++Y++G N+F   S EEF    L  + +       +  +    LPE +       DWR     + VK+QG C S W FS + SLEA Y     + I+ S QQ+VDC   +NN GC+GG  + A EY+    GL +   YPY
Sbjct:   29 FERWALKNNKFYTESEKL-YRMEIYNSNKRMIEEHNQREDVTYQMGENQFMTLSHEEFVDLYLQKSDS-------SVNIMGASLPEVQLEGLGAVDWRN---YTTVKEQGQCASGWAFSVSNSLEAWYAIRGFQKINASTQQIVDC--DYNNTGCSGGYNAYAMEYV-LRVGLVSSTNYPY 195          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 50/178 (28.09%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL-SYRLGLNKFADWSWEEFQR---HRLGAAQNCSATTKGNHKLTADVLPETKDWRES-GIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  R+ + Y +  E   R + F+ NL   +    + L +   G   F+D + EEF +         +  + T K       + +P T DWR++  I+S VK+QG C  CW  +   +++A +     + + +S Q+L+DC +  N  GCNGG    A+  +  + GL +E+ YP+
Sbjct:   40 FKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN--GCNGGFVWDAYLTVLNNSGLASEKDYPF 215          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 56/182 (30.77%), Postives = 87/182 (47.80%), Query Frame = 2
Query:  197 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH--------KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +F  F + + K Y + E  +     F  +L+ I     KG      +N+F+D S EEF+   L + Q   A  K           ++ A  +P   D R  G V+ +K+Q  CGSCW FS   ++E+ Y       + LS+Q+LVDCA   +  GC G        YI+ +G ++ E++YPY
Sbjct:   25 TFEEFKKAFNKHYVTPEAEQEARQNFLASLEHIEKAG-KGR-----INQFSDMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVNIPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCA---SQHGCGGDTVLNGLRYIQKNGVVE-EQSYPY 196          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  446 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +P++ DWR+ G V+ VK+Q  CG+CW F+   ++E+ Y    G    LS+QQ++DCA+ +   GC GG   +AFE+I  + G+ +   YPY
Sbjct:    2 VPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDCAKGY---GCKGGWEFRAFEFIISNKGVASGAIYPY 89          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATW_FELCA3.109e-1629.61Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
PEPT1_DERFA5.303e-1631.15Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
MDO1_PSEMR9.046e-1639.56Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
ACP2_ENTHI1.181e-1532.22Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
PEPT1_EURMA3.437e-1531.69Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CATW_HUMAN1.706e-1428.49Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATL3_PARTE3.800e-1433.15Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
CATW_MOUSE8.467e-1428.09Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
PEPT1_PSOOV1.106e-1330.77Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
BROM2_ANACO1.444e-1339.56Stem bromelain OS=Ananas comosus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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