CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 73/164 (44.51%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  248 EMKLRFATFSKNLDLIRSTNCKG-LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN------HKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            E   RF TF  N   I S N +G   YRL LN+F D    EF+   +G  +  + +   +        L    LP + DWR+ G V+ VKDQG CGSCW FST  S+E       G  +SLS+Q+L+DC  A +N GC GGL   AFEYIK +GGL TE AYPY
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDGCQGGLMDNAFEYIKNNGGLITEAAYPY 223          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 73/164 (44.51%), Postives = 90/164 (54.88%), Query Frame = 2
Query:  248 EMKLRFATFSKNLDLIRSTNCKG-LSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGN------HKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            E   RF TF  N   I S N +G   YRL LN+F D    EF+   +G  +  +     +        L    LP + DWR+ G V+ VKDQG CGSCW FST  S+E       G  +SLS+Q+L+DC  A +N GC GGL   AFEYIK +GGL TE AYPY
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLHLNRFGDMDQAEFRATFVGDLRRDTPAKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDGCQGGLMDNAFEYIKNNGGLITEAAYPY 223          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 70/175 (40.00%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA-------DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            R +  +  S+ E + RF  F  N   + + N     Y+L LNKFAD +  EF+    G+        +G  +          D +P + DWR+ G V+ VKDQG CGSCW FST  ++E        K +SLS+Q+LVDC     NQGCNGGL   AFE+IK  GG+ TE  YPY
Sbjct:   42 RSHHTVSRSLHEKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDC-DTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPY 215          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  194 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNH--KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYDGGLDTEEAYPY 718
            + FA F ++YGK+Y+  +E   RF  F +N++  +           G+  F+D + EEF+ R+R GA+   +A  +      +T    P   DWRE G V+PVK QG CGSCW FST G++E  +  A    +SLS+Q LV C     + GCNGGL   AF +I     G + TE +YPY
Sbjct:   39 MRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI--DSGCNGGLMDNAFNWIVNSNGGNVFTEASYPY 216          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.997e-27
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  320 SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            S+ + +N F D + EEF++   G         K   +     +P + DWRE G ++PVKDQG CGSCW FS TG+LE       GK ISL++Q LVDC+    N+GCNGG     F Y++ +GGLD+E +YPY
Sbjct:   15 SFTMAMNAFGDMTNEEFRQVMNGFQYQKHRKGKQFQERLLPEIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPY 147          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 75/193 (38.86%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVL--------PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDC--------AQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F  ++ K Y S EE   RF  F  NL  I   N   ++++     G+NKFAD S +EF+ + L    N       +    AD L        P   DWR  G V+PVK+QG CGSCW+FSTTG++E  +  +  K +SLS+Q LVDC         +   ++GCNGGL   A+ YI  +GG+ TE +YPY
Sbjct:   29 FLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYYL----NNKEAIFTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPY 216          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-GLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETK--------DWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            R +  +   ++E   RF  F +N+  I   N K    Y+L LNKF D + +EF+    G+      + +G  K T   + E          DWR  G V+ VKDQG CGSCW FST  S+E       G+ +SLS+Q+LVDC  ++ N+GCNGGL   AFE+I+   G+ TE++YPY
Sbjct:   44 RTHHTVARDLDEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCDTSY-NEGCNGGLMDYAFEFIQ-KNGITTEDSYPY 218          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 72/177 (40.68%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQA-FNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + YGK Y+   E   R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T K +       LP++ DWRE G V+ VK QG CGSCW FS  G+LEA      GK +SLS Q LVDC+ A + N+GCNGG  ++AF+YI  + G+D+E +YPY
Sbjct:   33 KTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSDPN---QKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPY 206          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 70/182 (38.46%), Postives = 104/182 (57.14%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTK-GNHKL-----TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  +   +G++Y + EE   R   F  N + IR  N    S   +RLGLNKFAD + +EF +  L A ++ S   K  N K+     + D  P + DWR+ G+++ VK QG CG  W FS TG++EAA+  A G  +SLS+Q+LVDC +   ++G   G   Q+FE++   GG+ T++ YPY
Sbjct:   44 FQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVE--ESEGSYNGWQYQSFEWVLEHGGIATDDDYPY 223          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.139e-26
Identity = 70/177 (39.55%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEE----FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCA-QAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + YGK Y+   E  +R   + KNL  +   N +   G+ SY LG+N   D + EE        R+ +    + T K N      +LP++ DWRE G V+ VK QG CG+CW FS  G+LEA      GK +SLS Q LVDC+ + + N+GCNGG  + AF+YI  + G+D++ +YPY
Sbjct:   33 KTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNR---ILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 206          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CYSP2_HORVU2.711e-2844.51Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP1_HORVU3.541e-2844.51Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSEP_RICCO3.541e-2840.00Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSP_TRYBB1.757e-2738.33Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATL6_HUMAN2.997e-2743.61Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CYSP1_DICDI3.915e-2738.86Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP_HEMSP5.113e-2738.98Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATS_BOVIN6.677e-2740.68Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
P34_SOYBN8.721e-2738.46P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATS_HUMAN1.139e-2639.55Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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