CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 70/178 (39.33%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLG--AAQNCSATTKGNHKLTADVL---PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  +  ++ KIYES++E   RF  F  NL  I  TN K  SY LGLN FAD S +EF++  +G  A          N   T   +   P++ DWR  G V+PVK+QG CGSCW FST  ++E       G  + LS+Q+LVDC +  ++ GC GG  + + +Y+  + G+ T + YPY
Sbjct:   48 FDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--HSYGCKGGYQTTSLQYVA-NNGVHTSKVYPY 222          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 68/178 (38.20%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQ-RHRLGAAQNCSATTKGNHKLTADVL--PETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYI--KYDGGLDTEEAYPY 718
            FA F +++G++YES  E   R + F +NL L R           G+  F+D + EEF+ R+  GAA   +A  +    +  +V+  P   DWR  G V+ VKDQG CGSCW FS  G++E  +  A     +LS+Q LV C +   + GC+GGL + AFE+I  + +G + TE++YPY
Sbjct:   38 FAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHNGAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPY 213          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  194 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            ++F ++A  + K++ +  E   RFA F  N   + +      +    LN FAD + EEF +  LG       TT  N K      PE+ DWR   I++P KDQG CGSCWTF TT  LE   ++  GK  S S+QQLVDC  + N  GC GG PS + ++I+ + GL  E  YPY
Sbjct:   16 VAFKQWAATHNKVFANRAEYLYRFAVFLDNKKFVEA------NANTELNVFADMTHEEFIQTHLGMTYEVPETTS-NVKAAVKAAPESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDLGKLYSFSEQQLVDCDASDN--GCEGGHPSNSLKFIQENNGLGLESDYPY 179          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL---SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNH-KLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   Y + YES EE + R + F  N+  +R+   + L   + + G+ KF+D + EEF+   L          K    K   D+ P   DWR  G V+ VKDQG CGSCW FS TG++E  +    G  +SLS+Q+L+DC +   ++ C GGLPS A+  IK  GGL+TE+ Y Y
Sbjct:  187 FKNFVITYNRTYESKEEARWRLSVFVNNM--VRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAIKNLGGLETEDDYSY 359          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.328e-26
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  446 LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +P++ DW + G V+PVK+QG CGSCW FS TG+LE    +  GK +SLS+Q LVD ++   NQGCNGGL   AF+YIK +GGLD+EE+YPY
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPY 91          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  218 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-GLS---YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +Y K Y  VEE +L+ A + +NL +I+  N + GL    + + +N FAD + EEF++         + T     K  +  LP  KDWR+ G V+PV++QG CGSCW F+  G++E       G    LS Q L+DC+++  N GC  G   QAF Y+  + GL+ E  YPY
Sbjct:   35 KYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQVSIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 68/177 (38.42%), Postives = 96/177 (54.24%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT---ADV-LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  +  ++ KIY++++E   RF  F  NL  I  TN K  SY LGLN FAD S +EF+    G+      TT+ +++      DV +PE  DWR+ G V+PVK+QG CGSCW FS   ++E       G     S+Q+L+DC +   + GCNGG P  A + +    G+     YPY
Sbjct:   48 FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR--RSYGCNGGYPWSALQLVA-QYGIHYRNTYPY 221          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL------------SYRLGLNKFADWSWEEFQRHRLGAAQNCSA--TTKGNH--KLTADV-LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F ++Y K Y+  +E + R+  F  NL+ I S N + L            S + G+NKF+D + +E      G   N S   T   N   K   D+ LP+  DWR++  V+P+KDQG CGSCW F   G++E+ Y     K I LS+QQL+DC +   + GCNGGL   AF+ +   GG++TE  YPY
Sbjct:   57 FKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCDEV--DLGCNGGLMHLAFQELLLMGGVETEADYPY 244          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 70/178 (39.33%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNL--DLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA---QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + +F  +Y K Y   E+ ++RF  F  N+    +     +G S   G+  ++D + +EF R  L A+    +  + T  +     + +P+  DWRE G V+ VK+QG CGSCW FSTTG++E+ + +  GK +SLS+QQLVDC     + GCNGGLPS A+E I   GGL  E+ YPY
Sbjct:   20 YVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRG-SAIYGVTPYSDLTTDEFARTHLTASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCDGL--DDGCNGGLPSNAYESIIKMGGLMLEDNYPY 193          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 70/177 (39.55%), Postives = 99/177 (55.93%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL---SYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  F   Y + YES EE + R   F++N+  IR+   + L   + + G+ KF+D + EEF    L    Q  S       K   D+ P   DWR+ G V+ VK+QG CGSCW FS TG++E  +    G  +SLS+Q+L+DC +   ++ C GGLPS A+  IK  GGL+TE+ Y Y
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNM--IRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNPLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCDKV--DKACLGGLPSNAYAAIKNLGGLETEDDYGY 337          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
PAPA2_CARPA1.488e-2639.33Chymopapain OS=Carica papaya PE=1 SV=2[more]
CYSP_TRYCR1.943e-2638.20Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
ACP1_ENTHI1.943e-2639.43Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATF_HUMAN3.314e-2638.98Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATL1_SHEEP4.328e-2657.14Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATJ_RAT5.653e-2637.43Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
PAPA1_CARPA9.642e-2638.42Papain OS=Carica papaya PE=1 SV=1[more]
CATV_NPVHZ9.642e-2637.89Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATL_SCHMA9.642e-2639.33Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE9.642e-2639.55Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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