CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:138..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 68/182 (37.36%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  194 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV-------LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            L F +F  +Y K Y S +E K R+  F  N++ I + N +  S    +N+FAD +  E      G A   S     N   T  V        P   DWR    V+ VKDQG CG+CW F+  G+LE+ Y   + + I L++QQLVDC   F + GC+GGL   A+E I + GG++ E  YPY
Sbjct:   38 LYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLA---SGDIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDC--DFVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPY 214          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 62/172 (36.05%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  218 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA-DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            +Y K Y S++E KL+   + + L +I+  N +       + + +N+F D + EEF++  +  +       K   K  A  +LP+  DWR+ G V+PV+ QG C +CW F+ TG++EA      GK   LS Q LVDC++   N GC GG    AF+Y+ ++GGL++E  YPY
Sbjct:   35 KYNKSY-SLKEEKLKRVVWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPY 205          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 63/175 (36.00%), Postives = 96/175 (54.86%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + + K Y S  +   R   + KNL  I + N +      +Y L +N   D + EE  +   G     S +   +   T +    +P++ D+R+ G V+PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++ +GG+D+E+AYPY
Sbjct:   31 KTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVT--ENYGCGGGYMTTAFQYVQQNGGIDSEDAYPY 203          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  218 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLS----YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            ++GK Y +V E +LR A + KN  +I   N + L     + + +N F D +  EF +   G  +                +P+  DWR  G V+PVK+QG+C S W FS TGSLE    +  G+ + LS+Q L+DC  +     C+GG    AF+Y+K +GGL TEE+YPY
Sbjct:   35 KHGKAY-NVNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 58/136 (42.65%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  320 SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            S++L +N   D + EE  R   G     S           D     P   DWR  G V+PVKDQG CGSCW FS+ G+LE    +  GK +SLS Q LV C    NN GC GG  + AFEY++ + G+D+E+AYPY
Sbjct:   75 SFQLAMNYLGDMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYCVS--NNNGCGGGYMTNAFEYVRLNRGIDSEDAYPY 208          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 63/175 (36.00%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + Y K Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +     D     P++ D+R+ G V+PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++ + G+D+E+AYPY
Sbjct:   31 KTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 203          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  440 DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            D LPE+ DWRE G++  VKDQG CGSCW FS   ++E+      G  ISLS+Q+LVDC +++ N+GC+GGL   AFE++  +GG+DTEE YPY
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDRSY-NEGCDGGLMDYAFEFVIKNGGIDTEEDYPY 107          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 68/167 (40.72%), Postives = 93/167 (55.69%), Query Frame = 2
Query:  248 EMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRH----RLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCA--QAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            E  +R   + KNL  I   N +   G+ SY +G+N   D + EE   +    R+    N S T K +   T   LP++ DWRE G V+ VK QG CGSCW FS  G+LE       GK +SLS Q LVDC+  + + N+GC GG  ++AF+YI  D  +D+E +YPY
Sbjct:   42 EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIGYMGSLRIPRPWNRSGTLKSSSNQT---LPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTEEKYGNKGCGGGFMTEAFQYI-IDTSIDSEASYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 63/175 (36.00%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  215 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + Y K Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +     D     P++ D+R+ G V+PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++ + G+D+E+AYPY
Sbjct:   32 KTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 204          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  +  ++ K Y++V+E   RF  F  NL  I   N     Y LGLN+F+D S +EF+   +G+  ++ +        +  D+  LPE+ DWR  G V+PVK QG+C SCW FST  ++E       G  + LS+Q+LVDC +   + GCN G  S + +Y+    G+     YPY
Sbjct:   48 FNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMINGYWLGLNEFSDLSNDEFKEKYVGSLPEDYTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDK--QSYGCNRGYQSTSLQYVA-QNGIHLRAKYPY 220          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CATV_NPVMC4.051e-2437.36Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATR_MOUSE6.910e-2436.05Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATK_MOUSE6.910e-2436.00Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
TEST2_MOUSE1.179e-2336.84Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATK_CHICK1.539e-2342.65Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATK_BOVIN1.539e-2336.00Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CYSPL_SOLLC2.011e-2353.76Low-temperature-induced cysteine proteinase (Fragm... [more]
CATS_RAT2.011e-2340.72Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATK_CANFA3.429e-2336.00Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
PAPA4_CARPA4.479e-2335.80Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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