CB293550

Overview
NameCB293550
Unique NameCB293550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +T DKI  L+KAA V +E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 44/108 (40.74%), Postives = 54/108 (50.00%), Query Frame = -3
Query:  234 SELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 554
            +ELAC YA LIL DD +A+T +KI  ++KAANV +E YWP LFAK LE  N+ DLI N                                      +SD+DMGF LFD
Sbjct:    5 AELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +T DKI  L+KAA V +E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +T DKI  L+KAA V +E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +T DKI  L+KAA V +E +WP LFAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            +   ELAC Y+ L+L DDGI IT DKI  L++AAN+ + S+WP L+A+ L K N+ +L++N                                     ESD+DMG  LFD
Sbjct:    4 IKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD 113          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  387 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLI 560
            S  ELAC YA LIL DD +AIT DKIA L+KAAN+  E +WP LFAK LE  ++ +LI
Sbjct:    3 SPQELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLI 60          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +T DKI  L+KAA V +E +WP LFAK L   ++  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_PIG (60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD + +  DKI  L+KAA V +E +WP  FAK L   N+  LI N
Sbjct:    3 SVSELACIYSALILHDDEVTVPEDKINALIKAAGVNVEPFWPGFFAKALANVNIGSLICN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            S SELAC Y+ LILHDD  AIT +K+ +++ AANV +E YWP LFA  LE +N+ DLI N
Sbjct:    5 STSELACVYSALILHDD--AITAEKMNKIISAANVNVEPYWPGLFA--LEGKNIGDLICN 60          
The following BLAST results are available for this feature:
BLAST of CB293550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RLA1_MOUSE1.632e-1256.6760S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_DROME1.632e-1240.7460S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_RAT2.131e-1256.6760S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_HUMAN2.131e-1256.6760S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN2.131e-1256.6760S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_DICDI4.748e-1235.4560S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_OSCBR8.099e-1260.3460S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CHICK8.099e-1255.0060S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA1_PIG3.078e-1153.3360S acidic ribosomal protein P1 OS=Sus scrofa GN=R... [more]
RLA1_POLPE4.019e-1158.3360S acidic ribosomal protein P1 OS=Polyorchis peni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06bb09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293550 ID=CB293550; Name=CB293550; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAAAATAAAAATTGATCCACAATACTTGTATACA
TCCAGAATCTCGAACACACAATGCAGAACCAAAGCAACTACTTAACACTT
TCTGTTCACTCAAGGTTACCTATACTTCAAATCTTAACAAACAAAGATAG
ATACTACTAATAGGTCAAAAAGACAATTAATCTTAAGAGTTGTAAACCAG
CACCAAACCAAATCATTCTGAAAGGAGCTCCTAATCAAACAAGCTGAAGC
CCATATCTTCGTCACTTTCTTCCTTGGGTTCTTCCTTCTTCTCCTCCGGG
GGGGGAGCAGCAGCATCAGCCCCAGCACCTCCAGCAGGAGCTGCAACAGC
AACTGCACCACCGCCACCACCAAACCCCACATTCATTATAAGATCATCTA
AGTTCCGCTTCTCTAAGAGCTTAGCAAACAAACTAGGCCAGTAAGATTCA
ATAAACACGTTGGCAGCCTTCACCAGTTGTGCAATCTTATCCGTAGTAAT
GGCGATGCCGTCATCGTGGAGGATCAAACAGGCATAAGTACAAGCAAGCT
CCGAAGCCGACATTGCTTTGACTCAAGAGATCAGACCTACTGCGGATTGC
GCCGTGCACTCTGCTGCGCCGCTGCCTCGTG
back to top