CB293550

Overview
NameCB293550
Unique NameCB293550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2369 contig Csv1_Contig2369:85..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_ALTAL (60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = -3 
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANV-FIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MS SELA +YA LIL DDG+ IT DK+  L+KAA +  +E  W +LFAK LE +++ DL++N                                     ESDEDMGF LFD
Sbjct:    1 MSTSELATSYAALILADDGVDITADKLQSLIKAAKIEEVEPIWTTLFAKALEGKDVKDLLLN-VGSGGGAAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMGFGLFD 110
The following BLAST results are available for this feature:
BLAST of CB293550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RLA1_ALTAL4.019e-1139.6460S acidic ribosomal protein P1 OS=Alternaria alte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293550 ID=CB293550; Name=CB293550; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAAAATAAAAATTGATCCACAATACTTGTATACA
TCCAGAATCTCGAACACACAATGCAGAACCAAAGCAACTACTTAACACTT
TCTGTTCACTCAAGGTTACCTATACTTCAAATCTTAACAAACAAAGATAG
ATACTACTAATAGGTCAAAAAGACAATTAATCTTAAGAGTTGTAAACCAG
CACCAAACCAAATCATTCTGAAAGGAGCTCCTAATCAAACAAGCTGAAGC
CCATATCTTCGTCACTTTCTTCCTTGGGTTCTTCCTTCTTCTCCTCCGGG
GGGGGAGCAGCAGCATCAGCCCCAGCACCTCCAGCAGGAGCTGCAACAGC
AACTGCACCACCGCCACCACCAAACCCCACATTCATTATAAGATCATCTA
AGTTCCGCTTCTCTAAGAGCTTAGCAAACAAACTAGGCCAGTAAGATTCA
ATAAACACGTTGGCAGCCTTCACCAGTTGTGCAATCTTATCCGTAGTAAT
GGCGATGCCGTCATCGTGGAGGATCAAACAGGCATAAGTACAAGCAAGCT
CCGAAGCCGACATTGCTTTGACTCAAGAGATCAGACCTACTGCGGATTGC
GCCGTGCACTCTGCTGCGCCGCTGCCTCGTG
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