CB293551

Overview
NameCB293551
Unique NameCB293551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2369 contig Csv1_Contig2369:84..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293551 vs. ExPASy Swiss-Prot
Match: RLA1_ARTSA (60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   73 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 252
            S  ELAC YA LIL DD + ITT+K+  +++AA VS+E YWP LF K LE  +L  +I N
Sbjct:    3 SKDELACVYAALILLDDDVDITTEKVNTILRAAGVSVEPYWPGLFTKALEGLDLKSMITN 62
[Close]
BLAST of CB293551 vs. ExPASy Swiss-Prot
Match: RLA1_ALTAL (60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   70 MSASELACTYACLILHDDGIAITTDKIAQLVKAANV-SIESYWPSLFAKLLEKRNLDDLIMN 252
            MS SELA +YA LIL DDG+ IT DK+  L+KAA +  +E  W +LFAK LE +++ DL++N
Sbjct:    1 MSTSELATSYAALILADDGVDITADKLQSLIKAAKIEEVEPIWTTLFAKALEGKDVKDLLLN 62
The following BLAST results are available for this feature:
BLAST of CB293551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RLA1_ARTSA4.185e-1153.3360S acidic ribosomal protein P1 OS=Artemia salina ... [more]
RLA1_ALTAL7.139e-1153.2360S acidic ribosomal protein P1 OS=Alternaria alte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293551 ID=CB293551; Name=CB293551; organism=Citrus sinensis; type=EST; length=640bp
GCACTAGGCAGCGGCGCAGCAGAGTGCACGGCGCAATCCGCAGTAGGTCT
GATCTCTTGAGTCAAAGCAATGTCGGCTTCGGAGCTTGCTTGTACTTATG
CCTGTTTGATCCTCCACGATGACGGCATCGCCATTACTACGGATAAGATT
GCACAACTGGTGAAGGCTGCCAACGTGTCTATTGAATCTTACTGGCCTAG
TTTGTTTGCTAAGCTCTTAGAGAAGCGGAACTTAGATGATCTTATAATGA
ATGTGGGGTCTGGTGGTGGCGGTGGTGCAGTTGCTGTTGCAGCTCCTGCT
GGAGGTGCTGGGGCTGATGCTGCTGCTCCCCCACCGGAGGAGAAGAAGGA
AGAACCCAAGGAAGAAAGTGACGAAGATATGGGCTTCAGCTTGTTTGATT
AGGAGCTCCTTTCAGAATGATTTGGTCTGGTGCTGGTTTACAACTCTTAA
GATTAATTGTCTTTTTGACCTATTAGTAGTATCTATCTTTGTTTGTTAAG
ATTTGAAGTATAGGTAACCTTGAGTGAACAGAAAGTGTTAAGTAGTTGCT
TTGGTTCTGCATTGTGTGTTCGAGATTCTGGATGTATACAAGTATTGTGG
ATCAATTTTTATTTTAAAAAACAAAATCTAAAACGGACGC
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