CB293558

Overview
NameCB293558
Unique NameCB293558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.172e-28
Identity = 64/135 (47.41%), Postives = 98/135 (72.59%), Query Frame = -2
Query:   27 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TSKNELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 428
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+   K+E++LNLV++YVPE++YRV +H  + K +  P I  +LY+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAK-QTLPVIYVKLYM 162          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.061e-28
Identity = 64/144 (44.44%), Postives = 100/144 (69.44%), Query Frame = -2
Query:   27 DKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TSKNELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 455
            +K++ +  +     VT  + S    G + + +  ISY  ++V+G GSFG+VF AK   T E VAIKKVLQD+R+KNRELQ+MR ++HPN++ LK+ F+S+   K+EL+LNL++EYVPE++YRV +H  + + ++ P I  +LY+
Sbjct:    2 NKQLLSCSLKSGKQVTMVVASVATDGVDQQVE--ISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGDKKDELYLNLILEYVPETVYRVARHYSK-QRQSIPMIYVKLYM 142          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27
Identity = 64/144 (44.44%), Postives = 99/144 (68.75%), Query Frame = -2
Query:   27 DKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TSKNELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 455
            +K++ +  +     VT  + S    G + + +  ISY  ++V+G GSFG+VF AK   T E VAIKKVLQD+R+KNRELQ+MR ++HPN++ LK+ F+S+   K+EL+LNL++EYVPE++YRV +H  + + +  P I  +LY+
Sbjct:    2 NKQLLSCSLKSGKQVTMVVASVATDGVDQQVE--ISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGEKKDELYLNLILEYVPETVYRVARHYSK-QRQQIPMIYVKLYM 142          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 63/135 (46.67%), Postives = 97/135 (71.85%), Query Frame = -2
Query:   27 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSKNE-LFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 428
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+  K + ++LNLV++YVPE++YRV +H  + K +  P I  +LY+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAK-QTLPVIYVKLYM 162          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = -2
Query:   27 GHIISTTIG--GKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSK-NELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 407
            G  I+T +   G+  +  Q +SY   +V+G GSFG+VFQAK  +TGE VAIKKVLQDRR+KNRELQ+MR ++H N++ L + F+S+  K +E+FLNLV+EY+PE++Y+V +   + K +  P    RLY+
Sbjct:  585 GSKITTVVATPGQGTDRVQEVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTK-QTIPINFIRLYM 713          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.287e-25
Identity = 56/109 (51.38%), Postives = 84/109 (77.06%), Query Frame = -2
Query:   27 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSKNELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 353
            + Y+ E V+G GSFG+V QA   +T E VAIKKVLQD+RYKNRELQ+M++++H N++SLK+ F+ T+  +E++LNLV+EYVP+++YRV +H    K +  P+I  +LY+
Sbjct:   54 VCYITEGVIGNGSFGVVTQAIVADTKEVVAIKKVLQDQRYKNRELQIMKMLNHINIVSLKNSFY-TSDNDEVYLNLVLEYVPDTVYRVSRHYSMSK-QPVPNIFVKLYI 160          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = -2
Query:   27 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSK-NELFLNLVMEYVPESMYRVLKH*QQCKSENAPHICERLYV 353
            ISY   +VVG GSFG+VFQAK + + E VAIKKVLQDRR+KNRELQ+MR + H N+I+LK  FFS+  K +E++LNLVME++PE++Y+V +   + K +  P    RLY+
Sbjct:   31 ISYTDAKVVGNGSFGVVFQAKMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKRDEVYLNLVMEFLPETLYKVERQYARAK-QTLPVNFVRLYM 139          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: MRK1_YEAST (Serine/threonine-protein kinase MRK1 OS=Saccharomyces cerevisiae GN=MRK1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.353e-24
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = -2
Query:   81 HIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSKNELFLNLVMEYVPESMYRVLKH 404
            H   T +  KN      ISY    VVG GSFG+V     +ET + VAIKKVLQDRRYKNREL+ M+++ HPN + L++ F+    ++E++LNLV++Y+P+S+Y+ L+H
Sbjct:  145 HDRKTDVDRKNHGGTIDISYPTTEVVGHGSFGVVVTTVIIETNQKVAIKKVLQDRRYKNRELETMKMLCHPNTVGLQYYFYEKDEEDEVYLNLVLDYMPQSLYQRLRH 252          

HSP 2 Score: 23.8682 bits (50), Expect = 6.353e-24
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = -3
Query:    8 RMPLIYVKGYTYQIFRGL 61
            +MP + +K Y YQ+F+ L
Sbjct:  259 QMPRVEIKFYAYQLFKAL 276          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.081e-23
Identity = 51/104 (49.04%), Postives = 77/104 (74.04%), Query Frame = -2
Query:   93 IISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TSKNELFLNLVMEYVPESMYR 401
            I  T   G  GE KQ +SY + +VVG+GSFG+V Q   +E+    AIK+VLQD+R+KNRELQ+MR+M HPN++ L   +++T  + +E++LNLV+E++PE++YR
Sbjct:   15 IKETARDGSTGEVKQ-LSYTSSKVVGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNLVLEFMPETIYR 117          

HSP 2 Score: 24.6386 bits (52), Expect = 1.081e-23
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = -3
Query:    5 MPLIYVKGYTYQIFRGLA 58
            MP++ VK Y YQ+ R LA
Sbjct:  129 MPMLEVKLYIYQLLRSLA 146          
BLAST of CB293558 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = -2
Query:   81 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSKNELFLNLVMEYVPESMYRVLKH 353
            IS+    VVG GSFG+VF     ET E VAIKKVLQD+R+KNREL++M+++ H N+I LK+ F+   S++E++LNL++EY+P+S+Y+ L+H
Sbjct:   37 ISFPTTEVVGHGSFGVVFATVIQETNEKVAIKKVLQDKRFKNRELEIMKMLSHINIIDLKYFFYERDSQDEIYLNLILEYMPQSLYQRLRH 127          
The following BLAST results are available for this feature:
BLAST of CB293558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GSK3B_HUMAN6.172e-2847.41Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
GSK3_CAEBR8.061e-2844.44Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
GSK3_CAEEL1.053e-2744.44Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3B_SPECI2.345e-2746.67Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
SGG_DROME1.520e-2648.46Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3_DICDI1.287e-2551.38Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3H_DROME1.423e-2454.55Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
MRK1_YEAST6.353e-2447.22Serine/threonine-protein kinase MRK1 OS=Saccharomy... [more]
GSK3_SCHPO1.081e-2349.04Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
MDS1_YEAST3.505e-2352.75Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bc02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293558 ID=CB293558; Name=CB293558; organism=Citrus sinensis; type=EST; length=630bp
ATGTAGCCAGGCCCCTGAAAATCTGGTACGTATAACCTTTCACATATATG
AGGGGCATTCTCTGATTTGCACTGCTGCTAATGCTTCAAAACCCTATACA
TGCTCTCTGGTACGTATTCCATAACCAAGTTGAGGAAAAGTTCGTTTTTA
CTGGTAGTTGAAAAGAAACAATGCTTCAAAGAAATCACATTTGGATGATC
CATCACCCGCATTAACTGCAGTTCACGATTCTTATATCTTCTGTCCTGCA
AAACCTTCTTGATAGCCACAGTCTCTCCAGTTTCCAAGCATTTAGCCTGG
AAGACAATACCAAATGACCCAGTTCCCACAACACGCTCCGCCATGTAGCT
AATAGTCTGTTTTGGCTCTCCATTTTTGCCTCCAATGGTGGTGGAAATGA
TGTGACCAGTGACATGGTCACTCCCATCAACAACAGCAGCAGACATCTCC
TTATCGTCGGCCATGGGGAGATTTGGAGAGAAATTGGGGTGAAGAAAGAG
AGGGAGGGAGAGAGAGAGAGAGAGAGAGCGATGGAAGAGAAATGGAGAAA
TTTCAACGGTGGATGAGGGAGAAGATGATGATCATGGTGTGGCGATGGAG
AATGAGAGAAAGGAGGACCCAAGCCTCGTG
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