CB293587

Overview
NameCB293587
Unique NameCB293587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.230e-70
Identity = 127/179 (70.95%), Postives = 142/179 (79.33%), Query Frame = 3
Query:  135 MERGATTENGHQNGGLE--GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            M   +  +NGH+NG +E   LC          D LNWGV AETLKGSHL+EVKRMVAEYRKP V LGGE+LT++QVAAIAT  S   VEL+ESAR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK G ALQKELI FLNAG+FG+  ES HTLPH  TRAAMLVR+NTLLQGY
Sbjct:    1 MATNSIKQNGHKNGSVELPELCIKK-------DPLNWGVAAETLKGSHLDEVKRMVAEYRKPVVKLGGESLTISQVAAIATHDSGVKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSTKESGHTLPHQATRAAMLVRINTLLQGY 172          

HSP 2 Score: 46.595 bits (109), Expect = 2.230e-70
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILE ITK LN+N+TPCLP
Sbjct:  173 SGIRFEILEVITKFLNNNVTPCLP 196          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 8.412e-70
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 3
Query:  225 DALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            D LNW + AE+L+GSHL+EVKRMVAE+RKP V LGGETLTVAQVA IA+  ++  VEL+E AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGN TES HTLPHS TRAAMLVR+NTLLQGY
Sbjct:   15 DPLNWEMAAESLRGSHLDEVKRMVAEFRKPAVKLGGETLTVAQVARIASRDNAVAVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNATESCHTLPHSATRAAMLVRINTLLQGY 161          

HSP 2 Score: 52.7582 bits (125), Expect = 8.412e-70
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKLLNHNITPCLP
Sbjct:  162 SGIRFEILEAITKLLNHNITPCLP 185          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.433e-69
Identity = 128/182 (70.33%), Postives = 141/182 (77.47%), Query Frame = 3
Query:  135 MERGATTENG---HQNGGLE--GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            ME    T NG    +NGG    GLC       +  D LNW V A++LKGSHL+EVKRM+ EYR+P V LGGE+LT+ QV AIA   S   VELAE+AR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTK GGALQKELI FLN+GIFGNGTESSHTLPHS TRAAMLVRVNTLLQGY
Sbjct:    1 MELSHETCNGIKNDRNGGTSSLGLC-------TGTDPLNWTVAADSLKGSHLDEVKRMIDEYRRPVVKLGGESLTIGQVTAIAAHDSGVKVELAEAARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGY 175          

HSP 2 Score: 49.6766 bits (117), Expect = 2.433e-69
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILE ITK LNHNITPCLP
Sbjct:  176 SGIRFEILETITKFLNHNITPCLP 199          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.172e-69
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 3
Query:  153 TENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT---SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTES-SHTLPHSTTRAAMLVRVNTLLQGY 659
            T NGH NG    LC          D LNWGV AE L GSHL+EVKRMVAEYRKP V L GETLT++QVAAI+    S   VEL+E AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFG+G E+ ++TLPHS TRAAMLVR+NTLLQGY
Sbjct:    7 TTNGHANGNGLDLCMKKE------DPLNWGVAAEALTGSHLDEVKRMVAEYRKPVVKLEGETLTISQVAAISARDDSGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAEAGNNTLPHSATRAAMLVRINTLLQGY 173          

HSP 2 Score: 51.2174 bits (121), Expect = 3.172e-69
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITK LNHNITPCLP
Sbjct:  174 SGIRFEILEAITKFLNHNITPCLP 197          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.137e-69
Identity = 119/169 (70.41%), Postives = 140/169 (82.84%), Query Frame = 3
Query:  159 NGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSSTNV--ELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            NG+ NG    +C N N N S+ D+LNWG+ A++++GSHL+EVKRMV EYRK  V LGG+ LT++QVAA+AT +T V  ELAE  R  VKASS+WV++SMNKGTDSYGVTTGFGATSHRRTK GGALQ ELI FLNAGIFGNGTES+ TLPH+ TRAAMLVR+NTLLQGY
Sbjct:    6 NGNCNGSSLNVC-NGNGNLSNNDSLNWGMAADSMRGSHLDEVKRMVEEYRKAVVPLGGKGLTISQVAAVATQNTGVAVELAEETRYAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGY 173          

HSP 2 Score: 48.521 bits (114), Expect = 4.137e-69
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEI+EAI K LNHNITPCLP
Sbjct:  174 SGIRFEIMEAIAKFLNHNITPCLP 197          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.137e-69
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 3
Query:  225 DALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATS----STNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            D LNW + A++LKGSHL+EVK+MVAE+RKP V LGGETLTVAQVAAIA      +  VEL+E AR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTKNGGALQKELI FLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGY
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNAKTVKVELSEGARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGY 167          

HSP 2 Score: 52.373 bits (124), Expect = 4.137e-69
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKLLNHN+TPCLP
Sbjct:  168 SGIRFEILEAITKLLNHNVTPCLP 191          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 5.395e-69
Identity = 117/149 (78.52%), Postives = 129/149 (86.58%), Query Frame = 3
Query:  225 DALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATS----STNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            D LNW + A++LKGSHL+EVK+MVAE+RKP V LGGETLTVAQVAAIA      +  VEL+E AR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELI FLNAG+FGNGTES HTLP S TRAAMLVR+NTLLQGY
Sbjct:   19 DPLNWEMAADSLKGSHLDEVKKMVAEFRKPVVKLGGETLTVAQVAAIAAKDNVKTVKVELSEGARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESCHTLPQSGTRAAMLVRINTLLQGY 167          

HSP 2 Score: 52.373 bits (124), Expect = 5.395e-69
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKLLNHN+TPCLP
Sbjct:  168 SGIRFEILEAITKLLNHNVTPCLP 191          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.196e-68
Identity = 122/173 (70.52%), Postives = 141/173 (81.50%), Query Frame = 3
Query:  156 ENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIA-----TSSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            +NGH NG +E +     +  S  D LNW +  ++L+GSHL+EVK+MV E+RKP V L GETLTVAQVA+IA     TS   VEL+ESAR GVKASS+WVM+SM+KGTDSYGVTTGF ATSHRRTKNGGALQKELI FLNAG+FGNGTES+HTLPHS TRAAMLVR+NTLLQGY
Sbjct:    7 QNGHVNGEVEEVL----WKKSIHDPLNWEMAVDSLRGSHLDEVKKMVDEFRKPIVKLWGETLTVAQVASIANADNKTSGFKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFCATSHRRTKNGGALQKELIKFLNAGVFGNGTESTHTLPHSATRAAMLVRINTLLQGY 175          

HSP 2 Score: 48.521 bits (114), Expect = 1.196e-68
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKL+N NITPCLP
Sbjct:  176 SGIRFEILEAITKLINSNITPCLP 199          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.560e-68
Identity = 116/156 (74.36%), Postives = 130/156 (83.33%), Query Frame = 3
Query:  198 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSSTNV--ELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            N +  +++ D LNWG+ AE+LKGSHL+EVKRM+ EYR P V LGGETLT+ QV AIA+    V  EL+E AR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK GG LQKELI FLNAGIFGNGTESSHTLP S TRAAMLVR NTLLQGY
Sbjct:   11 NGSPGFNTNDPLNWGMAAESLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASRDVGVMVELSEEARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPRSATRAAMLVRTNTLLQGY 166          

HSP 2 Score: 50.0618 bits (118), Expect = 1.560e-68
Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFE+LEAITK++NHNITPCLP
Sbjct:  167 SGIRFEMLEAITKMINHNITPCLP 190          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_LITER (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.654e-68
Identity = 119/165 (72.12%), Postives = 136/165 (82.42%), Query Frame = 3
Query:  180 LEGLCKNDN---YNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            +E + +N N     +   D LNW + +E++KGSHL+EVK MVAE+RKP V L G+TLT+ QVAAIA       VELAE+AREGVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGY
Sbjct:    1 METIVENGNGKTMEFCMKDPLNWEMASESMKGSHLDEVKNMVAEFRKPVVQLAGKTLTIGQVAAIAARDDGVTVELAEAAREGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGY 165          

HSP 2 Score: 47.3654 bits (111), Expect = 2.654e-68
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITK LN NITPCLP
Sbjct:  166 SGIRFEILEAITKFLNTNITPCLP 189          
The following BLAST results are available for this feature:
BLAST of CB293587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PAL1_PRUAV2.230e-7070.95Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL1_IPOBA8.412e-7080.27Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PALY_CITLI2.433e-6970.33Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL3_PETCR3.172e-6971.68Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL2_CICAR4.137e-6970.41Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL3_TOBAC4.137e-6978.52Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL2_TOBAC5.395e-6978.52Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL1_SOLTU1.196e-6870.52Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL2_POPKI1.560e-6874.36Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_LITER2.654e-6872.12Phenylalanine ammonia-lyase 1 OS=Lithospermum eryt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bd07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293587 ID=CB293587; Name=CB293587; organism=Citrus sinensis; type=EST; length=732bp
CGCCCTATTGAGACTTCCGAATTTCCTTTAGCTCATTCATTCTTCATCAC
TCCCATTCATTCATTCTTCTTCTTCTTCTTCTTTCTACAGATTTGGTATT
TTTTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGAGAGGTGCCA
CTACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAAT
GACAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGC
GGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGG
AGTACAGGAAGCCGGAGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCA
CAGGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGGCGGAATC
TGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGGGTGATGGAGAGCATGA
ATAAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGCGCCACTTCT
CATCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTATATT
TTTGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTAC
CTCACTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTC
CAGGGCTACCTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGC
TGCTCAATCACAACATCACTCCATGCCTCCCT
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