CB293591

Overview
NameCB293591
Unique NameCB293591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:235..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 58/185 (31.35%), Postives = 91/185 (49.19%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +V ++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K + +++ + +RE
Sbjct:   28 VRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.614e-19
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K   L++VE E+L + +  K             +    +V ++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K + +++ + +R+
Sbjct:   28 VRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPKVSLAVLNPY-IKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_DROME (ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster GN=Oscp PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.084e-17
Identity = 54/177 (30.51%), Postives = 84/177 (47.46%), Query Frame = -1
Query:  284 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRAR 814
            VK P+ +FG  G YA+ALY AA K + L++VE ++  L    +      ++     +  +    A+ E   + +F+  T + L +LA+NGRL+ LDT+   +  +  AH+GEV   V +                   L           VDPSI+GGL+V  G K  DMSI  + +
Sbjct:   23 VKPPVQVFGLEGRYATALYSAASKLSQLDQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVK 199          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_NEUCR (ATP synthase subunit 5, mitochondrial OS=Neurospora crassa GN=atp-5 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.844e-16
Identity = 61/191 (31.94%), Postives = 90/191 (47.12%), Query Frame = -1
Query:  254 KVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVT-KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 817
            KVK P+ LFG  G YA+ALY AAVKT+ALE     I  L     K        +  ++    +   + E+      S+ T K+FL  LAEN RL  L ++  +F EL  A +GEV++ VTS   +                 +           V+  I+GGLVVE G++  D+S+  +  +M + L E +
Sbjct:   30 KVKPPVTLFGLDGTYATALYTAAVKTSALEPTAKAISSLGNLLAKDPKLASILETPTLSPADKSAIVAELQKSVGVSNETVKNFLATLAENNRLGLLPSVVAKFSELMSAARGEVEMVVTSAQPLDNKTLNRLESAVAKSPYVGSGKKLKVTNKVNADIIGGLVVEIGERTIDLSVSSKIAKMNKLLSEAL 220          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_SCHPO (ATP synthase subunit 5, mitochondrial OS=Schizosaccharomyces pombe GN=atp5 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.938e-16
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = -1
Query:  254 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 805
            P+ L+G  G+YAS+LY AAVK + L+ VE  +  L    ++   + Q+     +  E +   ++ +        + K+F  VL +N RL  L  I K+F  L  A +GE++V +TS                               V PSI+GGL+VE G  + D+S+  R   + + L EPI
Sbjct:   33 PVQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNHRLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_KLULA (ATP synthase subunit 5, mitochondrial OS=Kluyveromyces lactis GN=ATP5 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = -1
Query:  254 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 814
            VK P+ LFG  G YA+AL+ AA KT ++E   S +  L E   K        ++ ++ AE R   ++ +  +       ++ L VLAEN RL  L+ +  +F +LT A+ G V+ TVT+   +                 +           V P I GGL+VE   +  D+SI  R  ++ + LRE I
Sbjct:   18 VKPPVQLFGLDGTYATALFTAASKTTSVEAAASSLNALKETVAKDTKLTSILENPALSAEDRNIVVDTLSKKINLDQSVQNLLKVLAENNRLSLLEHVTSQFSKLTDAYHGLVQATVTTAQPLDSKLFKRVEKALAASSLVGKGKSLKLENVVKPEIQGGLIVEVSDRTVDLSIASRINKLNQVLREAI 206          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_ASHGO (ATP synthase subunit 5, mitochondrial OS=Ashbya gossypii GN=ATP5 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 57/190 (30.00%), Postives = 85/190 (44.74%), Query Frame = -1
Query:  254 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVT-KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 814
            VK P+ LFG  G YASAL+ AA KT ++E     +  L +   K         + ++PA  R   +  +  +    D   ++ + VLAEN RL  L  +A  F +LT AH G V+ TVT+   +                 +           V P I GGL+VE   +  D+SI  R  ++ + L+E I
Sbjct:   18 VKPPIQLFGLEGTYASALFTAASKTTSIESAGKALASLSKTIAKDAKLGAILANPALPAGDRTVVVQTLAQKTPGMDAAVQNLMQVLAENNRLNLLQGVAGEFTKLTDAHNGLVQATVTTAQPLEGKLFRRVEKALAQSSFIGAGKTLKLENVVKPEIQGGLIVEVADRTVDLSIASRISKLNQVLKESI 207          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_CANGA (ATP synthase subunit 5, mitochondrial OS=Candida glabrata GN=ATP5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = -1
Query:  254 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEIC-TQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 814
            VK P+ LFG  G YASAL+ AA K  ++E   S ++ L    K+        ++ ++  + R   ++ +  + A       + L VLAEN +L   D I+ +F  L  AH G ++ +VT+   +                 +           V P I GGL+VE G +  D+S+  + +++ + L E I
Sbjct:   18 VKPPVKLFGVEGTYASALFTAASKETSVESASSSLVKLSSLIKEDAKLKHIMENPALSTKDRAVVVDSLVKSSANLDKPVVNLLKVLAENNKLGLFDKISSQFSILNDAHNGLIRGSVTTAQPLDSKNFKRLEKALQQSSLVGQQKTLKLDNVVKPDIKGGLIVEVGDQTIDLSVSSKIQKLNKVLEETI 207          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPD_PELUB (ATP synthase subunit delta OS=Pelagibacter ubique GN=atpH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 47/175 (26.86%), Postives = 79/175 (45.14%), Query Frame = -1
Query:  260 SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 784
            +G Y+ ALY  AV+ N L ++E     ++     ++ +    KD +   E ++NA+++I  Q K +++   FL  L    R   +D I K FVE     +GE+K  +TS                                D S++GGL+V+ G  + D SIK + +Q+E  + E
Sbjct:   12 AGRYSLALYELAVEANNLNEIEVHSASIINLITSSEDFKSLIKDPTNNKEDQLNALSKISEQYKLNELLTKFLSFLISKRRFFYVDKILKSFVETCSVKRGELKAELTSA--KDLTENEINNIKEELTKNFSSKIKLNYKHDASLIGGLIVQVGSTMVDTSIKNKLQQIENRMIE 184          
The following BLAST results are available for this feature:
BLAST of CB293591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ATPO_MOUSE3.877e-1931.35ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT6.614e-1930.27ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_DROME8.084e-1730.51ATP synthase subunit O, mitochondrial OS=Drosophil... [more]
ATPO_NEUCR6.844e-1631.94ATP synthase subunit 5, mitochondrial OS=Neurospor... [more]
ATPO_SCHPO8.938e-1629.35ATP synthase subunit 5, mitochondrial OS=Schizosac... [more]
ATPO_KLULA1.686e-1430.16ATP synthase subunit 5, mitochondrial OS=Kluyverom... [more]
ATPO_ASHGO8.366e-1430.00ATP synthase subunit 5, mitochondrial OS=Ashbya go... [more]
ATPO_CANGA1.336e-1126.84ATP synthase subunit 5, mitochondrial OS=Candida g... [more]
ATPD_PELUB1.744e-1126.86ATP synthase subunit delta OS=Pelagibacter ubique ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bd10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bd10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293591 ID=CB293591; Name=CB293591; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTAAACAAAAAATGTTGCCGTCCATCAAAACCATT
TGCCATGAAAGCAAAGTGATCAAAATGTGAATTTTATTTTGCCAATGATT
CAATTCATTCAGAAATGGCGGAGCACAAGCAAACAGCACCAAACAAAAGC
ATGAATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATAATCATC
TTGAAAATTTGGGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGTGCCAAA
ATGAATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAAACTTAA
TGGACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCACCAAGA
ATGCTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTGGCCAAG
TGTCTCTTGCAGTGTCTCTTTCAACTCTTTCTCTTCTTCTGGGGGAAGTG
GAATAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCCATGGTT
AACTCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCTCCCATT
CTCAGCCAAAACAACCAAGAAGTGCTTCGTAACATCTGAAAATTTAGCCT
GAGTACAGATTTCGTTAATGGCATTAACTCTCGTCTCTGCAGGCACAGAC
AAGTCCTTTGTGAACTGAAAATATGTATCAGCCTTCTTTGAAGCCTCAAC
AAGGTCAAGAATCTCAGACTCAACCTTCTCCAGTGCGTTAGTTTTCACTG
CCGCAATGTACAGAGCAGAAGCATAATTTCCTGAACCTCCAAACAAAGCC
AGGGGCACCTTAACTTTCTGCTCCTTCTGCAA
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