CB293595

Overview
NameCB293595
Unique NameCB293595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1230..1944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = -3
Query:  223 TFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 684
            T+++QP+M + E+ + A  A +   +  + VN  N DMVGHTGD++A + AC+A D+ +  ++ A+EK GG  +VTADHGN + M+     G            T+HTL PVP+ +   G PD    R    +G LA++A T ++L G E+P +
Sbjct:  361 TYDLQPEMSSKEVTD-AFVAAIEEGYDLIVVNYANPDMVGHTGDLQAAMKACEAVDQGLGRVLAALEKAGGAMIVTADHGNCDVMIDPETGGPH----------TAHTLNPVPVVV--VGAPDGATLR----DGRLADLAPTILHLMGLESPKE 497          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI2_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina acetivorans GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 63/161 (39.13%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            IPS    T++++P+M A E+ +   + I S ++  + +N  N DMVGHTG  EA V A +A D  V  II+A++K GG+ L+TADHGNAE M +   +GEP          T+HT  PV     G G   +VK    L NG L+++A T ++L G   P +
Sbjct:  367 IPSPKVATYDLKPEMSAYEVTDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVQAVEAVDTCVGRIIEALKKAGGVALITADHGNAEQM-ENQHTGEP---------HTAHTSNPVRCIYAGKG---EVK---ALENGKLSDLAPTLLDLLGVPKPEE 511          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.867e-21
Identity = 66/164 (40.24%), Postives = 91/164 (55.49%), Query Frame = -3
Query:  223 VEIPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 711
            V IPS    T+++QP+M + ++ +    AI S+ F  V  N PN DMVGHTG+ +A V AC+A D +V  ++ A+E VGG  L+TADHGNAE M                Q  T+HT + VP I +G P      K R    NG L++VA T ++L G E P +
Sbjct:  355 VLIPSPKVKTYDLQPEMSSEQLTDELVAAIESQAFDVVICNYPNGDMVGHTGNFDAAVKACEAVDHSVGRVVSALEAVGGECLITADHGNAEQMSDATTG----------QAHTAHTNELVPFIYVGRP-----AKAR----NGRLSDVAPTILHLIGMEQPDE 499          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.184e-21
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            I S    T+++QP+M + E+ ++   AI S  +  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+EKVGG  L+TADHGNAE M   +            Q  T+HT + +P+   G           ++ NGG L+++A T + L G + P +
Sbjct:  360 IQSPKVATYDLQPEMSSTELTDKLVAAIESTEYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEALEKVGGECLITADHGNAEQMTDESTG----------QAHTAHTSELIPLIYVGRD--------AEIENGGRLSDLAPTMLTLMGQDVPEE 503          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio parahaemolyticus GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            + S    T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A DE+V  +++AI++VGG  L+TADHGNAE M+     G          V T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  358 VASPKVATYDLQPEMSSPELTEKLVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDESVGKVVEAIKEVGGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_PSESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. tomato GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 64/162 (39.51%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            IPS    T+++QP+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I DA+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T + L G E P +
Sbjct:  356 IPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGIMEAAIKAVEYLDVCVGRITDALEKVGGEALITADHGNVEQMT----------DDATGQAHTAHTSEPVPFVYVG-------KRQLKVREGGVLADVAPTMLQLLGMEKPQE 500          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_THEEB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermosynechococcus elongatus (strain BP-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 65/159 (40.88%), Postives = 87/159 (54.72%), Query Frame = -3
Query:  247 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGG-----PGLPDDVKFRTDLPNGGLANVAATFINL 705
            IPS    T++  P M AL + +  KKAI  + +  V VN  NSDMVGHTG + AT+ A +  D  V ++++A  KVGG  L+TADHGNAE M+          +DGN    T+HT  PVP I + G     PG    V  R D   G LA++A T + +
Sbjct:  354 IPSPMVTTYDQAPAMSALAVTQAVKKAIEKQEYALVVVNFANSDMVGHTGKLAATIQAIETVDRCVGVLVEAATKVGGTLLITADHGNAEYMID---------EDGN--PWTAHTTNPVPFILVEGEKRKVPGHGGHVILRKD---GCLADIAPTILEI 498          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            I S S  T+++QP+M ++E+ E+   AI S ++  +  N PN DMVGHTG  +A V AC+A D  V  ++ A+++V G  L+TADHGNAE M+     G          + T+HT  PVP    G           ++ +GG L ++A T +NL   E P++
Sbjct:  356 IKSPSVATYDMQPEMSSIELTEKLVSAIKSTKYDVIICNYPNGDMVGHTGVYDAAVKACEAVDSCVGKVVAALKEVDGECLITADHGNAEQMIDPVTGG----------IHTAHTNLPVPFIYVGR--------NAEMASGGRLCDIAPTMLNLMDMEIPAE 499          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_PSEU2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 63/162 (38.89%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            IPS    T+++QP+M A E+ ++   AI  +R+  + VN  N DMVGH+G +EA + A +  D  V  I +A+EKVGG  L+TADHGN E M            D   Q  T+HT +PVP    G       K +  +  GG LA+VA T ++L G E P +
Sbjct:  356 IPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIVVNYANGDMVGHSGIMEAAIKAVECLDVCVGRIAEALEKVGGEALITADHGNVEQMT----------DDSTGQAHTAHTSEPVPFVYVG-------KRQLKVRQGGVLADVAPTMLHLLGMEKPQE 500          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 59/162 (36.42%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            I S    T+++QP+M + E+ ++  +AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  +++A+ KV G  L+TADHGNAE M                Q  T+HT + VP I +G  G           PNG L+++A T + L G   PS+
Sbjct:  360 IQSPKVATYDLQPEMSSTELTDKLVEAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDACIGRVVEALAKVDGECLITADHGNAEQMTDEQTG----------QAHTAHTSELVPLIYVGRKG--------EIAPNGRLSDLAPTMLTLMGQTVPSE 503          
The following BLAST results are available for this feature:
BLAST of CB293595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
GPMI_ROSDO1.429e-2137.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METAC1.429e-2139.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO1.867e-2140.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA3.184e-2135.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBPA5.431e-2137.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSESM5.431e-2139.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THEEB7.094e-2140.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN7.094e-2136.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEU27.094e-2138.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHELP9.264e-2136.422,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293595 ID=CB293595; Name=CB293595; organism=Citrus sinensis; type=EST; length=716bp
GAGCTATATCCGCTTTTGTCTGCCTCCAAAAGACAGCAATCGAAATGTAA
GCCGAAAAACAGCACGCGTATCAAAATGAATTCAAGACCCCAAAATTCAA
TTTATTGTTTTACGTTTTAACGGAATTCCTCCGGAGTTATAAAATCTAGG
CGACGATCCATTGGTCGCCCAGTCGTCAGTTACTTCTCAGTCGTCAGTTA
CTTCAATAAGACTTGGCTCGTAGTCACTAGGCGCCTCATATCCATGGAGA
TTGATAAAAGTTGCTGCTACATTGGCCAGCCCACCATTAGGGAGATCTGT
GCGGAACTTGACATCATCTGGCAGTCCAGGACCTCCGATTGCAATGGGAA
CGGGTTTAAGAGTGTGAGACGTGAGCACTTGAATATTGCCATCCTTAAGA
AGAGGCTCCCCAGATTTGTTCCTCTTGACCATGTCCTCAGCATTGCCATG
ATCTGCAGTAACAAGATATATTCCACCAACTTTCTCTATTGCATCAATGA
TTATCTTGACAGCTTCATCAGCAGCCTTGCATGCCACCACTGTTGCCTCA
ATATCTCCCGTGTGCCCCACCATGTCACTATTTGGTAGGTTAACACGCAC
CTGGTGGAACCTGCGACTAAGGATGGCCTTCTTTGCCCTTTCAACAATCT
CCAAAGCCTTCATCTTGGGCTGTACATTGAAAGTAATTCCAGAATCACTA
GGAATTTCCACATATT
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