CB293595

Overview
NameCB293595
Unique NameCB293595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1230..1944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 59/161 (36.65%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            I S    T+++QP+M + E+ ++  +AI S ++  +  N PN DMVGHTG+ +A V AC+A D  +  ++DA+ KVGG  L+TADHGNAE M  R+ S          Q  T+HT + VP    G       +  +    G L+++A T +NL G + P++
Sbjct:  359 INSPKVATYDLQPEMSSTELTDKLVEAIESAKYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVDALAKVGGECLITADHGNAEQM--RDPS--------TGQAHTAHTSELVPFIYVG-------RDASIAEGGRLSDIAPTMLNLMGQDIPAE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_PHOPR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Photobacterium profundum GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            + S    T+++QP+M A E+ E+   AI    F  +  N PN DMVGHTG  +A V AC+A D  +  +++AI+ VGG  L+TADHGNAE M+     G          V T+HT  PVP+   G       K  T    G L+++A T ++L   E P++
Sbjct:  359 VASPKVATYDLQPEMSAPELTEKLVAAIKGGEFDTIICNYPNGDMVGHTGVYDAAVKACEALDGCIGQVVEAIKSVGGQLLITADHGNAEMMINPETGG----------VHTAHTNLPVPLIYVGD------KSLTLKDGGKLSDLAPTMLSLSDIEIPAE 503          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus (strain YJ016) GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            + S    T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  358 VASPKVATYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            + S    T+++QP+M + E+ E+   AI S ++  +  N PN+DMVGHTG  EA   A +A D +V  +++AI++VGG  L+TADHGNAE MV     G          + T+HT  PVP+   G      V+F+     G L+++A T ++L G E P++
Sbjct:  358 VASPKVATYDLQPEMSSTELTEKMVAAIKSGKYDTIICNYPNADMVGHTGVYEAAEKAIEALDASVGQVVEAIKEVGGQLLITADHGNAEMMVDPETGG----------IHTAHTSLPVPLIYVG---DKAVEFK---EGGKLSDLAPTMLSLAGLEIPAE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            I S    T+++QP+M + E+ ++  +AI S ++  +  N PN DMVGHTG  +A V AC+A D  +  ++DA+ KV G  L+TADHGNAE M                Q  T+HT + VP I +G  G  ++        +G L+++A T + L G E PS+
Sbjct:  360 IQSPKVATYDLQPEMSSAELTDKLVEAIESTKYDVIICNYPNGDMVGHTGSFDAAVKACEAVDTCIGRVVDALAKVDGECLITADHGNAEQMTDEQTG----------QAHTAHTSELVPLIYVGRNGSIEN--------DGRLSDLAPTMLTLMGEEVPSE 503          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_METMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanosarcina mazei GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = -3
Query:  247 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINL 705
            IPS    T++++P+M A E+ +   K ILS ++  + +N  N DMVGHTGD EA V A +  D  V  I++A+   GG  L+TADHGNAE M + + +GEP          T+HT  PV     G G   +VK    L NG L+++A T ++L
Sbjct:  367 IPSPKISTYDLKPEMSAYEVTDEVVKRILSGKYDVIILNFANMDMVGHTGDFEAAVKAVETVDNCVGRIVEALRTAGGAALITADHGNAEQM-ENSHTGEP---------HTAHTSNPVKCIYTGNG---EVK---ALENGKLSDLAPTLLDL 503          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            IPS    T++++P+M A +I +   + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I++A++++GG+ L+TADHGNAE M+  +K+GEP          T+HT  PV     G G   +VK    L  G L ++A T + L G   P +
Sbjct:  361 IPSPKIATYDLKPEMSAYKITDEVVRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIVEALKEIGGVALITADHGNAEQMID-SKTGEP---------HTAHTSNPVRCIYFGNG---EVK---ALKKGKLCDLAPTLLELIGIPKPQE 505          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = -3
Query:  229 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 705
            +PS    T+++QP+M A E+ ++A  AI S +F  + +N  N DMVGHTG + A + AC+  D+ +  I DAI K GG+ LVTADHGN E M       +P+    +    TSHTL  VP+ +         +  T + +G LA++A T + L G + P
Sbjct:  357 VPSPKVATYDLQPEMSAPELTDKAVAAIESGKFDMIVLNFANPDMVGHTGSLSAAIKACETVDQGLGRINDAIVKAGGVLLVTADHGNCETM------RDPVTGGAH----TSHTLNVVPVILA------HARGET-IHDGRLADLAPTMLALMGVKQP 498          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            + S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  EA V AC+A DE +  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP I +G   +         L  GG L+++A T + L   + P+D
Sbjct:  358 VASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGG----------VHTAHTSLPVPLIYVGNKAI--------SLKEGGKLSDLAPTMLALSDLDIPAD 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVP-IAIGGPGLPDDVKFRTDLPNGG-LANVAATFINLHGYEAPSD 705
            + S    T+++QP+M + E+ ++   AI S ++  +  N PN DMVGHTG  EA V AC+A DE +  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP I +G   +         L  GG L+++A T + L   + P+D
Sbjct:  358 VASPKVATYDLQPEMSSKELTDKLVAAIKSGKYDAIICNYPNGDMVGHTGVYEAAVKACEAVDECIGRVVEAIKEVDGQLLITADHGNAEMMIDPETGG----------VHTAHTSLPVPLIYVGNKAI--------SLKEGGKLSDLAPTMLALSDLDIPAD 502          
The following BLAST results are available for this feature:
BLAST of CB293595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
GPMI_SHEAM9.264e-2136.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PHOPR9.264e-2137.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVY1.210e-2037.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVU1.210e-2037.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESH1.210e-2036.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METMA1.210e-2039.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC1.210e-2037.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX1.580e-2037.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM2.064e-2036.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH2.064e-2036.812,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293595 ID=CB293595; Name=CB293595; organism=Citrus sinensis; type=EST; length=716bp
GAGCTATATCCGCTTTTGTCTGCCTCCAAAAGACAGCAATCGAAATGTAA
GCCGAAAAACAGCACGCGTATCAAAATGAATTCAAGACCCCAAAATTCAA
TTTATTGTTTTACGTTTTAACGGAATTCCTCCGGAGTTATAAAATCTAGG
CGACGATCCATTGGTCGCCCAGTCGTCAGTTACTTCTCAGTCGTCAGTTA
CTTCAATAAGACTTGGCTCGTAGTCACTAGGCGCCTCATATCCATGGAGA
TTGATAAAAGTTGCTGCTACATTGGCCAGCCCACCATTAGGGAGATCTGT
GCGGAACTTGACATCATCTGGCAGTCCAGGACCTCCGATTGCAATGGGAA
CGGGTTTAAGAGTGTGAGACGTGAGCACTTGAATATTGCCATCCTTAAGA
AGAGGCTCCCCAGATTTGTTCCTCTTGACCATGTCCTCAGCATTGCCATG
ATCTGCAGTAACAAGATATATTCCACCAACTTTCTCTATTGCATCAATGA
TTATCTTGACAGCTTCATCAGCAGCCTTGCATGCCACCACTGTTGCCTCA
ATATCTCCCGTGTGCCCCACCATGTCACTATTTGGTAGGTTAACACGCAC
CTGGTGGAACCTGCGACTAAGGATGGCCTTCTTTGCCCTTTCAACAATCT
CCAAAGCCTTCATCTTGGGCTGTACATTGAAAGTAATTCCAGAATCACTA
GGAATTTCCACATATT
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