CB293595

Overview
NameCB293595
Unique NameCB293595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1230..1944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.639e-19
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            IPS    T++++P+M A E+ E   + I S ++  + +NL N DMVGH+G +EA V A +  D+ V  II AI++VGG  +V ADHGNAE MV+   + E        Q  T+HT  PV        +    + R +L  G L++VA T + + G E P +
Sbjct:  361 IPSPKVATYDLKPEMSAYEVTEELIERIGSGKYDVIVLNLANMDMVGHSGIMEAAVKAVEVVDDCVGKIITAIKEVGGEAMVMADHGNAEKMVEFCNNTER-------QCYTAHTSNPVRC------IYVTQEKRVELQKGRLSDVAPTILKIMGIEKPPE 508          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  223 VEIPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 711
            V IPS    T+++QP+M A E+ +   + I S+++  +  N  N+DMVGH+G ++AT+ A +A D  + II  A+  +GG  L+TADHGNAE M+    +          +V T+HT  PVP+        D +K       G L+++A T + +   E P +
Sbjct:  354 VLIPSPDVATYDLQPEMSAFELTDALVENIESQKYDLIICNFANTDMVGHSGKLDATIKAVEAVDTCLGIIYKAMFAIGGEMLITADHGNAEQMINPQTN----------EVHTAHTNNPVPLIFVSNRKADIMK----PGKGALSDIAPTLLAMMDIEKPDE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  223 TFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 684
            T+++ P+M A E+  +  +AI    +  + VN  N DMVGHTG + A + AC+A D+ + ++++A+EK GG  +V ADHGN E  +     G            T+HT  PVP+ + G   P+  K R    NG LA+VA T ++L G + P +
Sbjct:  361 TYDLAPEMAAPEVSAKLVEAI-EAGYDLIVVNYANPDMVGHTGSLPAAIRACEAVDKGLGMMLEALEKAGGAAVVIADHGNCETTIDPETGGPH----------TAHTTNPVPVIVFGG--PEGAKLR----NGRLADVAPTVLDLMGLDLPPE 497          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = -3
Query:  223 VEIPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 711
            + +PS    T+++QP+M A E+ +    AI S+ +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M            +   Q  T+HT +PVP    G G      +      G L ++A + + L G   P +
Sbjct:  354 IMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM----------FSEATNQAHTAHTSEPVPFLYVGGG------WHFTHSEGSLIDIAPSLLALLGITPPPE 500          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/163 (33.74%), Postives = 86/163 (52.76%), Query Frame = -3
Query:  223 VEIPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 711
            + +PS    T+++QP+M A E+ +    AI S+ +H +  N  N+DMVGHTG+ EATV A +  D+ ++ +  A++  GG  L+TADHGNAE+M            +   Q  T+HT +PVP    G G      +      G L ++A + + L G   P +
Sbjct:  354 IMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQALKNNGGKLLITADHGNAEEM----------FSEATNQAHTAHTSEPVPFLYVGGG------WHFTHSEGSLIDIAPSLLALLGITPPPE 500          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_GEOTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            I S    T++++P+M A E+ E   K I + ++  + +N  N DMVGH+G +E T+ A +A DE +  ++DAI + GGI ++TADHGNA++++     G+P          T+HT  PVP+ +   G    ++ R D   G L ++A T ++L G   P +
Sbjct:  360 INSPKVATYDLKPEMSAYEVTEALLKEIAADKYDAIILNYANPDMVGHSGMLEPTIKAVEAVDECLGKVVDAILEKGGIAIITADHGNADEVL--TPEGKP---------QTAHTTNPVPVIVTKHG----IELRKD---GILGDLAPTMLDLLGLPQPKE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM--VKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            IPS S  T+N+ P+M A E+     + I  +++  + +N  N+DMVGHTG+IEAT  A  A D+ +  I++ I+    + ++TADHGNAE+M  VK N               T+HTL PVP  I       +   +  L NG L +VA T + +   E P +
Sbjct:  347 IPSPSVTTYNLMPEMSAKEVTNTVIERIKLQKYSLIILNYANADMVGHTGNIEATKQAITALDQCLNKILNCIQGTNYVLVITADHGNAEEMFDVKNN------------MPYTAHTLNPVPFII------CNYSKQIRLKNGRLCDVAPTILEILNIEKPKE 491          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 55/167 (32.93%), Postives = 92/167 (55.09%), Query Frame = -3
Query:  205 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 705
            +PS    T+++QP+M +  + ++   AI S ++  +  N PN DMVGHTG  +A V AC+A D  V  ++ A +  GG  L+TADHGNAE M       +P+    + Q  T+HT +PVP+   G       +  +   +G L++++ + ++L G E P +   S++
Sbjct:  366 VPSPDVATYDLQPEMNSTLLTDKLVGAIESGKYDFIVCNYPNGDMVGHTGSFDAAVKACEAVDTCVGRVVKAAQDNGGECLITADHGNAEQM------QDPV----SGQAHTAHTCEPVPLIYVG-------RNASPAASGTLSDISPSVLHLMGMEQPQEMTGSVL 515          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = -3
Query:  223 IPSDSGITFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 705
            + S    T+++QP+M A E+ E+   AI S ++  +  N PN DMVGHTG  +ATV A ++ DE +  +++AI++V G  L+TADHGNAE M+     G          V T+HT  PVP+   G      ++F+     G L+++A T + L     P++
Sbjct:  358 VASPKVATYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDATVKAVESLDECIGKVVEAIKEVDGQLLITADHGNAEMMIDPETGG----------VHTAHTNLPVPLIYVG---SKAIEFK---EGGKLSDLAPTMLALTDTAIPAE 502          
BLAST of CB293595 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = -3
Query:  223 TFNVQPKMKALEIVERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA-IGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 684
            T+++QP+M A E+  +  +AI +  +  +  N  N DMVGHTGD++A + AC+A D+ +  ++ A++  GG  +VTADHGN E MV     G            T+HT   VP+A +GGP         T L +G LA++A T + L G + P +
Sbjct:  362 TYDLQPEMSAPEVTAKFVEAIRAG-YDLIVTNYANPDMVGHTGDLDAAIKACEAVDQGLGEVVAALKDAGGAMIVTADHGNCELMVDPETGG----------AHTAHTTNLVPVALVGGPE-------GTALKDGRLADLAPTLLALMGLDQPEE 498          
The following BLAST results are available for this feature:
BLAST of CB293595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
GPMI_METBU6.639e-1937.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VESOH8.671e-1933.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP8.671e-1935.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL8.671e-1933.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH8.671e-1933.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOTN8.671e-1934.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_EHRCR8.671e-1935.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP38.671e-1932.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM1.132e-1835.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST1.479e-1836.132,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293595 ID=CB293595; Name=CB293595; organism=Citrus sinensis; type=EST; length=716bp
GAGCTATATCCGCTTTTGTCTGCCTCCAAAAGACAGCAATCGAAATGTAA
GCCGAAAAACAGCACGCGTATCAAAATGAATTCAAGACCCCAAAATTCAA
TTTATTGTTTTACGTTTTAACGGAATTCCTCCGGAGTTATAAAATCTAGG
CGACGATCCATTGGTCGCCCAGTCGTCAGTTACTTCTCAGTCGTCAGTTA
CTTCAATAAGACTTGGCTCGTAGTCACTAGGCGCCTCATATCCATGGAGA
TTGATAAAAGTTGCTGCTACATTGGCCAGCCCACCATTAGGGAGATCTGT
GCGGAACTTGACATCATCTGGCAGTCCAGGACCTCCGATTGCAATGGGAA
CGGGTTTAAGAGTGTGAGACGTGAGCACTTGAATATTGCCATCCTTAAGA
AGAGGCTCCCCAGATTTGTTCCTCTTGACCATGTCCTCAGCATTGCCATG
ATCTGCAGTAACAAGATATATTCCACCAACTTTCTCTATTGCATCAATGA
TTATCTTGACAGCTTCATCAGCAGCCTTGCATGCCACCACTGTTGCCTCA
ATATCTCCCGTGTGCCCCACCATGTCACTATTTGGTAGGTTAACACGCAC
CTGGTGGAACCTGCGACTAAGGATGGCCTTCTTTGCCCTTTCAACAATCT
CCAAAGCCTTCATCTTGGGCTGTACATTGAAAGTAATTCCAGAATCACTA
GGAATTTCCACATATT
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