CB293596

Overview
NameCB293596
Unique NameCB293596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            VA+ +LDG+G+      N +  A+ P  D +    P     L+A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ + ET+
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETL 167          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQ----DEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            V +A+LDGWG  + +  N I  A+TP MDS   + P    L+ A G+ VGLP    MGNSEVGH  +G+GRI  Q    +   + + ++ Q     E  N IK   + GTLH+ GL SDGGVHS +D L  L+K ASE   +++ +HI+TDGRD    S+ ++   I
Sbjct:   19 VVLAILDGWGHREENLDNAIKNANTPIMDSLWHAYPHT--LINASGADVGLPN-GQMGNSEVGHLTIGSGRIIQQELVRITNVVKNNQLTQVNELKEMANSIKK--KKGTLHITGLCSDGGVHSHIDHLLGLIKWASEEHIEKVAIHIITDGRDTPAKSAYKYIRQI 180          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.686e-25
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            V ++V+DG G  +  + N   +A TP  D      P    +++A G  VGLP +D MGNSEVGH  +GAG+I   G  L++  +   K  Q+      FN +K + ET TLHL+GLLSDGGVHS  + L  L++ A E G K + +H+  DGRDV
Sbjct:    5 VILSVIDGLGLREEKQGNAFKLAKTPNFDKLFNEYPNS--VIQASGDYVGLP-DDQMGNSEVGHLNIGAGQIVYTGLSLINKDIKDNKFKQNAKFIAAFNAVKKNNETNTLHLMGLLSDGGVHSHEEHLFKLIEAAHENGLKNVSVHVFGDGRDV 156          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_GRATL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gracilaria tenuistipitata var. liui GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 72/165 (43.64%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            + + +LDGWG  +  K N I +ADTPT+D    S P    LL A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  ++     + +E  N I  K +F    LHLIGL S+GGVHS +  L  LL  A  R   +I +H +TDGRD     S  F E I
Sbjct:    4 IILTILDGWGYSENKKGNAIQIADTPTIDKLWNSYPNT--LLNASGRDVGLP-EGQMGNSEVGHTTIGAGRIINQDLVRISKSIEDRSFFNNEAINSICQKINFYNTKLHLIGLCSNGGVHSHIKHLFALLDIAM-RYKIQICIHAITDGRDTSPYGSKIFIEEI 164          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI1_METAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina acetivorans GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.301e-24
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  164 VLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYI-KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            +LDGWG  + ++ N +  A TP +D   K  P  W LL A G AVGLP E  MGNSE GH  +GAGRI  Q    +++++ +G  +++  F N I K      +LHLIGL+S GGVHS    L  L+K A E+G K++ +H   DGRDV
Sbjct:   12 ILDGWGYREVEEGNAVLSAGTPNLDRLVKDYP--WCLLEASGGAVGLP-EGMMGNSEDGHLNIGAGRIVYQNLTRINISIRNGDFFKNPVFLNAISKVKANDSSLHLIGLVSCGGVHSYTPHLHALIKLAKEKGLKKVYIHAFLDGRDV 157          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.311e-24
Identity = 62/160 (38.75%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S    V + +LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+GGVHS  D L  ++  A ERGAK++ LH   DGRD
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPNT--LIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEGGVHSHQDHLYAMINMAVERGAKQVYLHAFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.353e-24
Identity = 70/165 (42.42%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            VA+ +LDG+     DK N +  A  P  D F    P     L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E     +K + E GT LHL GLLSDGGVHS ++ L  LL+ A   G +++ +H   DGRDV   S+  + + +
Sbjct:    6 VALIILDGFALRDEDKGNAVTHAKKPNFDRFWNEYPHA--TLQASGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETLLAAVKHAKEKGTNLHLFGLLSDGGVHSHIEHLYALLRLAKSEGLEKVYIHGFLDGRDVAPQSAETYLKEL 167          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.254e-23
Identity = 70/170 (41.18%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  143 NNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            N  V + +LDGWG+    K + I  A+ P ++S  K+ P     LR  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+ +  + Q+    E F Y K + +   +H +GLLSDGGVHS    L+ LL  A   G K+  +H  TDGRDV   S++   E +
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANIPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVQNKTLSQEKALKEAFQYAKENNKP--IHFLGLLSDGGVHSHTSHLRGLLDAAQNFGLKKTFIHAFTDGRDVDPKSAIATIENL 166          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.638e-23
Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  113 KLKEHPQLSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-KPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            K K HP       + +A+LDGWG     + N I +A TPT+DS  ++ P    LL A G  VGLP +  MGNSEVGH  +G GR+  Q    +  ++ +   + +   N     +  T T LHLIGL S+GGVHS LD L  L+  A  +    + +H++TDGRD    S+  F + I
Sbjct:    3 KKKVHP-------IVLAILDGWGHSNSHQGNAIKIAKTPTIDSLLETYPNT--LLVASGEEVGLP-KGQMGNSEVGHTTIGGGRVVEQELVKIGNSIENKSFFNNVQLNCACDHAISTQTSLHLIGLCSNGGVHSHLDHLLALIHVAESKKVPNLYIHLITDGRDTNSNSAKSFIKLI 170          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 61/152 (40.13%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            V + +LDGWG     ++N I   DTP M++   + P    L++A GS VGLP +  MGNSEVGH  +GAGRI  Q    +   +   ++        +    +  TGTLHL+GL SDGGVHS ++ L  L+  A+  G K++ +H +TDGRD
Sbjct:   18 VVLTILDGWGHRNDSEHNAIRQGDTPVMEALWHAYPHA--LIQASGSHVGLP-DHQMGNSEVGHLTIGAGRIIRQELVRISDTVRDDQLNNTPALVELAEHLQNDTGTLHLLGLCSDGGVHSHVNHLCGLIHWAAAAGIKKVAVHAITDGRD 166          
The following BLAST results are available for this feature:
BLAST of CB293596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_LISMO5.092e-2540.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMP8.686e-2541.922,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO8.686e-2541.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GRATL1.935e-2443.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METAC3.301e-2444.302,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU4.311e-2438.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACME7.353e-2442.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ1.254e-2341.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU1.638e-2338.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX2.139e-2340.132,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293596 ID=CB293596; Name=CB293596; organism=Citrus sinensis; type=EST; length=640bp
TGCCCTATGATTCTCTCTCTGTATAATATCTCTTGTTTGTTTCCTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGCGGTGTTGGATGGCTGGGGCGAGTTCAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCCCCTGGGAGGTGGAGGTTGCTCCGAGCTCACGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
ATCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTACGATTCGCAGAAACTATT
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