CB293596

Overview
NameCB293596
Unique NameCB293596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_WOLTR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.010e-14
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPD-KYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS 616
            V + +LDGWG    D KYN I  A+ P       + P     L A G+ VGLP +  +GNSEVGH  + +GR+  Q  + +D  + + +  ++          + G  H++GL+SDGGVHS    +  L    S+   K + +H   DGRD L  S
Sbjct:    6 VVLCILDGWGNGIGDSKYNAISNANPPCWQYISSNYPRC--SLSACGTDVGLP-DGQIGNSEVGHMNICSGRVVMQSLQRIDREIKTIENNKNLRSFISDLKDKNGVCHIMGLVSDGGVHSHQKHISTLANKISQHEIK-VVIHAFLDGRDTLPNS 157          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  143 NNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            N  + + ++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD       +F E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  143 NNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            N  + + ++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD       +F E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFP--TLQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            +S N  +A+ ++DG G  K D  N +++A+  T++   K+ P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +    + +  + +        +H++G+ S+G VHS  + +  ++K   +    ++ LH+++DGRD       +F E I
Sbjct:    1 MSLNKKLALIIIDGLGIGKKDDTNAVYLANPKTLNYLIKNYPTLE--ISAAQQPIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINSYTKRLDYESLVLNDINNEIVHVVGMYSNGLVHSNYEHIHWIIKELVKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_TOBBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Tomato big bud phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  287 GSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLD 520
            G AVGLP +  MGNSEVGH  LGAGR+  Q    ++  +  G  ++++ F  +    +T    LHL+GL+SDGGVHS LD
Sbjct:    1 GEAVGLPAQQ-MGNSEVGHLNLGAGRVVHQSLTYINRKIKDGSFFKNKCFLKVIQHVKTNKSKLHLLGLVSDGGVHSHLD 79          
The following BLAST results are available for this feature:
BLAST of CB293596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_WOLTR9.010e-1433.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA3.785e-1228.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP23.785e-1228.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU14.185e-1128.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TOBBP4.185e-1146.252,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293596 ID=CB293596; Name=CB293596; organism=Citrus sinensis; type=EST; length=640bp
TGCCCTATGATTCTCTCTCTGTATAATATCTCTTGTTTGTTTCCTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGCGGTGTTGGATGGCTGGGGCGAGTTCAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCCCCTGGGAGGTGGAGGTTGCTCCGAGCTCACGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
ATCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTACGATTCGCAGAAACTATT
back to top