CB293596

Overview
NameCB293596
Unique NameCB293596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.225e-23
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            V + +LDG+G       N +  A+ P +D+  K  P     L A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  +++ G  +++   N    + +    TLHL+GLLS GGVHS +D L+ L+K A E+  K++ +H   DGRDV   S+  + E I
Sbjct:    6 VVLMILDGFGLTNKVDGNAVSAANKPNLDNILKKYPHTQ--LGASGMDVGLP-EGQMGNSEVGHLNIGAGRIVYQALTKITKSISDGDFFENVALNKAIENVKKNNSTLHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDI 167          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 61/152 (40.13%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            + + +LDG+G     +YN IH A TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ + +   N  +  +   G  +H++GLLSDGGVHS  D +  + + A+ RGA++I LH   DGRD
Sbjct:    8 LVLIILDGFGHSDKPEYNAIHAASTPVYDRLRATYPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFDNAAINQAVDKAVAAGKAVHILGLLSDGGVHSHQDHIVAMAELAARRGAEKIYLHAFLDGRD 156          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_MYXXD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Myxococcus xanthus (strain DK 1622) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 66/165 (40.00%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            V + +LDGWG  +    N I +A TP +D  K ++P  +  L+  G AVGLP E  MGNSEVGH  +GAGRI  Q    ++ A  SG++ Q+          +     LHL+GL+S GGVHS +D L  LLK A ER    + +H   DGRD    S++ + E +
Sbjct:    7 VLLCILDGWGIRQERDNNAIVLAGTPHLD--KLASPYPFTELQTAGLAVGLP-EGQMGNSEVGHTNIGAGRIVYQDLVRINRAAESGELAQNPVLRAALDGVKADGKALHLLGLVSPGGVHSSMDHLFALLKAAKERNVAHVYVHAFLDGRDTPPQSALGYVEEL 168          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S N  + + +LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S N  + + +LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S N  + + +LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S N  + + +LDGWG  + D+YN I  A+TP  D + ++ P    LL+A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_CLOBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            V + +LDG+G       N +  A+ P +D+  K  P     L A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  +++ G  +++   N    + +    TLHL+GLLS GGVHS +D L+ L+K A E+  K++ +H   DGRDV   S+  + E I
Sbjct:    6 VVLMILDGFGLTNKVDGNAVSAANKPNLDNILKKYPHTQ--LGASGMDVGLP-EGQMGNSEVGHLNIGAGRIVYQALTKITKSISDGDFFENVALNKAIENAKKNNSTLHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDI 167          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22
Identity = 61/152 (40.13%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +A+ +LDG+G  + DKYN I+ A  PT        P     +   G AVGLP E  MGNSEVGH  LGAGR+  Q    ++ A+A G  Y +  +       ++    +H+IGLLSDGGVHS  D +  +++ A +RGA+++ +H   DGRD
Sbjct:    8 LALIILDGFGYSESDKYNAINAAKAPTWRKIWAENPKT--TIATSGMAVGLP-EGQMGNSEVGHMTLGAGRVVYQNFTRINKAIADGDFYTNPVYTKAVDDAQSQGKAVHVIGLLSDGGVHSHEDHMIAMMELAVKRGAEKVYMHAFLDGRD 156          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.062e-22
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            VA+ +LDG+        N +  A+ P  D +    P    +L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--MLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDV 155          
The following BLAST results are available for this feature:
BLAST of CB293596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_CLOB16.225e-2338.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY8.130e-2340.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYXXD8.130e-2340.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL8.130e-2339.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH8.130e-2339.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC8.130e-2339.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA8.130e-2339.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOBL8.130e-2338.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD21.062e-2240.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA1.062e-2243.592,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293596 ID=CB293596; Name=CB293596; organism=Citrus sinensis; type=EST; length=640bp
TGCCCTATGATTCTCTCTCTGTATAATATCTCTTGTTTGTTTCCTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGCGGTGTTGGATGGCTGGGGCGAGTTCAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCCCCTGGGAGGTGGAGGTTGCTCCGAGCTCACGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
ATCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTACGATTCGCAGAAACTATT
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